Job Description Q06067 Confidence 100.00% Date Thu Jan 5 12:33:25 GMT 2012 Rank 8 Aligned Residues 228 % Identity 14% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

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		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.
Query Sequence		Q	R	R	M	A	Q	A	E	R	L	A	T	L	G	E	L	M	A	G	V	A	H	E	V	R	N	P	L	T	A	I	R	G	Y	V	Q	I	L	.	.	.	.	.	.	.	.	R	Q	Q	T	S	D	P	I	H	Q	E	Y	L	S	V	V	L	K	E	I	D	S	I	N	K	V	I	Q	Q	L	L	E	F	S
Query Conservation																																								.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T	M	A	Q	G	V	I	E	Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F	R	M	L	I	N	Q	H	T	L	L	F
Template Known Secondary structure		G	G	G	G			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		449	450	.	.	.	.	.	.	.										.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.						.	480	.	.	.	.	.	.	.				.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																						.	.	.	.	.										.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																						.	.	.	.	.										.	.	.
Query Sequence		R	P	R	H	S	Q	W	Q	Q	.	.	.	.	.	.	.	.	.	V	S	L	N	A	L	V	E	E	T	L	V	L	V	Q	T	A	G	V	Q	A	.	.	.	.	.	R	V	D	F	I	S	E	L	D	.	.	.	N	E	L	S	P	I	N	A	D	R	E	L	L	K	Q	V	L	L	N	I	L	I	N	A
Query Conservation											.	.	.	.	.	.	.	.	.																						.	.	.	.	.										.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																						.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M	L	F	E	L	F	K	N	S
Template Known Secondary structure		S			S	S		S	S	T	T	S	B	T	T	B																										S												T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		512	.	.	.									.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.
Query Sequence		V	Q	A	I	.	.	.	.	.	.	.	.	S	A	R	G	K	I	R	I	Q	T	W	Q	Y	S	D	S	Q	Q	A	I	S	I	E	D	N	G	C	G	I	D	L	S	L	Q	K	K	I	F	D	P	F	F	T	T	K	A	S	G	T	G	L	G	L	A	L	S	Q	R	I	I	N	A	H	Q	G	D	I	R
Query Conservation						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																.																														.	.	.
Template Conservation																													.																														.	.	.
Template Sequence		M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	.	D	L	S	I	K	I	S	D	L	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	L	.	.	.	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K
Template Known Secondary structure										T	T		S	S													S	S	.										S									G	G	G	G		T	T	T				.	.	.		T	T												T	T
Template Predicted Secondary structure																													.																														.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	L	P	G	Y	G	A	T	F	T	L	I	L	P	I	N	P	Q	G	N	Q	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A	L	S	S	E	S	F	E	R
Template Known Secondary structure						T	T	T										S		G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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