Job Description Q06067 Confidence 97.44% Date Thu Jan 5 12:33:25 GMT 2012 Rank 96 Aligned Residues 189 % Identity 10% Template c1wa9A_ PDB info PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period Resolution 3.15 Å

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		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	Q	A	L	R	E	T	R	T	L	N	D	L	I	I	E	N	A	A	D	G	V	I	A	I	D	R	Q	G	D	V	T	T	M	N	P	A	A	E	V	I	T	G	Y	Q	R	H	E	L	V	G	Q	P	Y	S	M	L	F	D	N	T	Q	F	Y	S	P	V	L	D	T	L	E	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A
Template Known Secondary structure							S			S	T	T		B			T	T	S									T	T		B						G	G	G												T	T	S	B	G	G	G	G	B		T	T	T															T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	T	E	H	V	A	L	E	I	S	F	P	G	R	D	R	T	I	E	L	S	V	T	T	S	R	I	H	N	T	H	G	E	M	I	G	A	L	V	I	F	S	D	L	T	A	R	K	E	T	Q	R	R	M	A	Q	A	E	R	L	A	T	L	G	E	L	M	A	G	V	A	H	E	V	R	N	P	L	T
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		G	A	S	F	C	S	K	P	Y	R	F	L	I	Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q	G	P	K	Q	C	N	V	F	E	A	A	P	T	C	K	L	.	.	K	I	S	E	E	A	Q	S	R	N	T	R	I	K	E
Template Known Secondary structure		T													T	T	S															T	T	T																	S	S	S		T	T	S								.	.			G	G	G	S	T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.			.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R	G	Y	V	Q	I	L	R	Q	Q	T	S	D	P	I	H	Q	E	Y	L	S	V	V	L	K	E	I	D	S	I	N	K	V	I	Q	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	V	K	R	L	A	E	T	V	S	R	P	S	D	T	V	K	Q	E	V	S	R	R	C	Q	A	L	A	S	F	M	E	T	L	M	D	E	V
Template Known Secondary structure									S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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