Job Description P0ACQ4 Confidence 90.11% Date Thu Jan 5 11:18:42 GMT 2012 Rank 203 Aligned Residues 100 % Identity 13% Template c3r4kD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution Resolution 2.46 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		R	D	L	E	Y	L	V	A	L	A	E	H	R	.	.	.	H	F	R	R	A	A	D	S	C	H	V	S	Q	P	T	L	S	G	Q	I	R	K	L	E	D	E	L	G	V	M	L	L	E	R	T	S	R	K	V	L	F	T	Q	A	G	M	L	L	V	D	Q	A	R	T	V	L	R	E	V	K	V	L	K	E
Query Conservation															.	.	.
Alig confidence															.	.	.																										.	.	.
Template Conservation																																											.	.	.
Template Sequence		K	A	L	T	L	L	T	Y	F	N	H	G	R	L	E	I	G	L	S	D	L	T	R	L	S	G	X	N	K	A	T	V	Y	R	L	X	S	E	L	Q	E	.	.	.	A	G	F	V	E	Q	V	E	R	S	Y	R	L	G	P	Q	V	L	R	L	A	A	L	R	E	A	S	V	P	I	L	S	A	S	R	R
Template Known Secondary structure								T	T		B	T	T	B	S													S															.	.	.	T	T	S												T	T												S
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	Q	Q	G	E	T	M	S	G	P	L	H	I	G	L	I	P	T	V	G	P	Y	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	R	E	L	S	E	D	T	G	E	T	T	H	L	S	L	L	Q	G	E	Q	L	A	S	L
Template Known Secondary structure											S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions