Job Description P0ACQ4 Confidence 94.03% Date Thu Jan 5 11:18:42 GMT 2012 Rank 162 Aligned Residues 213 % Identity 7% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																																					.
Query Sequence		M	S	G	P	L	H	I	G	L	I	P	T	V	G	P	Y	L	L	P	H	I	.	.	.	.	.	.	.	.	.	.	I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	C	V	I	.	L	A	L	V	K	E	S	E	A	F	I	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.																																					.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation
Template Sequence		E	G	R	T	L	N	V	A	V	S	P	A	S	P	P	M	L	F	K	S	A	D	G	K	L	Q	G	I	D	L	E	L	F	S	S	Y	C	Q	S	R	H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I
Template Known Secondary structure		T	T												T	T	T					S	S	S				S														T																				T	S		S														T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		V	P	L	F	D	E	P	M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	C	V	P	M	A	D	L	A	G	E	K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	.	S	G
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M	A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D
Template Known Secondary structure							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S	T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	L	P	A	L	A	V	P	P	E	R	K	R	D	G	V	V	Y	L	P	C	I	K	P	E	P	R	R	T	I	G	L	V	Y	R	P	G	S	P	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D	G	H	F	D	K	V	L	K	Q	A
Query Conservation
Alig confidence																																									.	.	.
Template Conservation																																									.	.	.
Template Sequence		L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	.	.	.	S	P	V	R	D	D	F	N	L	W	L	K	E	Q	G	P	Q	K	I	S	G	I	V	D	S	W
Template Known Secondary structure																T	S																						T	T	.	.	.
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions