Job Description P0ACQ4 Confidence 73.30% Date Thu Jan 5 11:18:42 GMT 2012 Rank 261 Aligned Residues 193 % Identity 9% Template c3hv1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	C	V	I	L	A	L	V	K	E	S	E	A	F	I	E	V	P	L	F	D	E	P	M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	C	V	P	M	A	D	L	A	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	N	A	V	F	K	L	Y	G	I	D	V	E	W	Q	A	I	D	W	D	X	K	E	T	E	L	K	N	G	T	I	D	L	I	W	N	G	Y	S	V	T	D	E	R	K	Q	S	A	D	F	T	E	P	Y	X	V	N	E	Q	V	L	V	T	K	K	S	S	G	I	D	S	V	A	G	X	A	G	K	T
Template Known Secondary structure									T	T	T										G	G	G								T	S		S				S	S		B							T	T																		G	G	G				S	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	S	G	I	T	L	L	P	A	L	A	V	P	P	E	R	K	.	.	.	R	D	G	V	V	Y	L	P	C	I	K	P	E	P	R	R
Query Conservation																																																															.	.	.
Alig confidence																																																															.	.	.
Template Conservation
Template Sequence		L	G	A	Q	A	G	S	S	G	Y	D	A	F	N	A	S	P	K	I	L	K	D	V	V	A	N	Q	K	V	V	Q	Y	S	T	F	T	Q	A	L	I	D	L	N	S	G	R	I	D	G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	K	S	G	V	L	D	Q	Y	N	V	X	P	A	G	Y	E	G	E
Template Known Secondary structure						T	T											T	T	T	T	T	T	T	S	G	G	G						S	S											T	S		S																T	T		G	G	G							S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		267	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		T	I	G	L	V	Y	R	P	G	S	P	.	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D	G	H	F	D	K	V	L	K	Q	A
Query Conservation													.
Alig confidence													.															.	.
Template Conservation																												.	.
Template Sequence		S	F	A	V	G	A	R	K	V	D	K	T	L	I	K	K	I	N	Q	G	F	E	T	L	Y	K	.	.	N	G	E	F	Q	K	I	S	N	K	W
Template Known Secondary structure									T	T																		.	.		T
Template Predicted Secondary structure																												.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions