Job Description P0ACQ4 Confidence 48.35% Date Thu Jan 5 11:18:42 GMT 2012 Rank 339 Aligned Residues 185 % Identity 15% Template c2ylnA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation Resolution 1.12 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	C	V	I	L	A	L	V	K	E	S	E	A	F	I	E	V	P	L	F	D	E	P	M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	C	V	P	M	A	D	L	A	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	R	A	V	A	E	K	L	G	V	K	V	E	F	K	E	T	Q	W	D	S	M	M	A	G	L	K	A	G	R	F	D	V	V	A	N	Q	V	G	L	T	S	P	E	R	Q	A	T	F	D	K	S	E	P	Y	S	W	S	G	A	V	L	V	A	H	N	D	S	N	I	K	S	I	A	D	I	K	G	V
Template Known Secondary structure											T										G	G	G								T	S		S				S	S					S											S		S											T	T		S			S	G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	S	G	I	T	L	L	P	A	L	A	V	P	P	E	R	K	R	.	.	.	.	D	G	V	V	Y	L	P	C	I	K	P	E	P	R
Query Conservation																																																																.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																															.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		K	T	A	Q	S	L	T	S	.	.	.	.	.	.	.	.	N	Y	G	E	K	A	K	A	A	G	A	Q	L	V	P	V	D	G	L	A	Q	S	L	T	L	I	E	Q	K	R	A	D	A	T	L	N	D	E	L	A	V	L	D	Y	L	K	K	N	P	N	A	G	V	K	I	V	W	S	A	P	A	D	E	K
Template Known Secondary structure							T	T	S	.	.	.	.	.	.	.	.									T	T							S	S										T	T	S																		S	T	T	S	S									G	G	G
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		R	T	I	G	L	V	Y	R	P	G	S	P	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D	G	.	H	F	D	K	V	L	K	Q	A
Query Conservation																																.
Alig confidence												.	.																			.
Template Conservation												.	.
Template Sequence		V	G	S	G	L	I	V	N	K	G	.	.	N	D	E	A	V	A	K	F	S	T	A	I	N	E	L	K	A	D	G	T	L	K	K	L	G	E	Q	F
Template Known Secondary structure										S	S	.	.																		T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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