Job Description P0ACQ4 Confidence 86.69% Date Thu Jan 5 11:18:42 GMT 2012 Rank 216 Aligned Residues 180 % Identity 12% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	C	V	I	L	A	L	V	K	E	S	E	A	.	.	.	.	F	I	E	V	P	L	F	D	E	P	M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	C	V	P	M	A	D	L	A	G	E	K	L	L	M	L	E	D	G	H
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V	I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E
Template Known Secondary structure					T	T												T	S		S				S	S		B							T	T	S				S		S											T	T	S					S	T	T						S			T	T						B	T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	.	.	.	.	S	G	I	T	L	L	P	A	L	A	V	P	P	E	R	K	R	D	G	V	V	Y	L	P	C	I	K	P	E	P	R	R	T	I	G	L	V	Y	R	P
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	K	L	L	T	V	G	K	P	F	A	I	E	G	Y	G	I	G	L	P	P
Template Known Secondary structure		S																		G	G	G		B	S	S										S	S	S				S																	S	S							S														T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D	G	H	F	D	K	V	L	K	Q	A
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		N	S	P	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	.	.	H	G	F	M	D	V	L	H	D	K	W
Template Known Secondary structure		T		T	T														.	.	T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions