Job Description P0ACQ4 Confidence 99.59% Date Thu Jan 5 11:18:42 GMT 2012 Rank 36 Aligned Residues 185 % Identity 14% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	H	I	G	L	I	P	T	V	G	P	Y	L	L	P	H	I	I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	C	V	I	L	A	L	V	K	E	S	E	A	F	I	E	V	P	L	F	D	E	P	M	L	L	A	I	Y	E
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		L	L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	G	A	.	.	.	.	.	.	.	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T
Template Known Secondary structure															T													T	T										S		.	.	.	.	.	.	.					S								S		S			T	T															T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	P	W	A	N	R	E	C	V	P	M	A	D	L	A	G	E	K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	S	G	I	T	L	L	P	A	L	A	V	P	P	E	R	K	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.																.	.	.	.
Template Conservation					.	.	.	.	.	.	.																.	.	.	.
Template Sequence		N	L	P	.	.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	.	.	.	.	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R
Template Known Secondary structure		T	S		.	.	.	.	.	.	.				G	G	G	G	S		B			B	T	T	.	.	.	.		T														B		S			B	S	S										T	T			B														T
Template Predicted Secondary structure					.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		94	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	V	Y	L	P	C	I	K	P	E	P	R	R	T	I	G	L	V	Y	R	P	G	S	P	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A	R	M	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	I	Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D	K	L	T
Template Known Secondary structure		T	S																					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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