Job Description P0AFA2 Confidence 99.95% Date Thu Jan 5 11:25:43 GMT 2012 Rank 4 Aligned Residues 236 % Identity 17% Template c2q8fA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 Resolution 2.03 Å

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		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	Q	Q	L	V	D	T	L	V	E	Q	L	T	A	T	L	A	L	D	R	H	Q	E	R	Q	Q	Q	L	I	V	M	E	E	R	A	T	I	A	R	E	L	H	D	S	I	A	Q	S	L	S	C	M	K	M	Q	V	S	C	L	Q	M	Q	G	D	A	L	P	E	S	S	R	E	L	L	S	Q	I	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	V	Q	L	V	Q	S	W	Y	I	Q	S	L	Q	E	L	L	D	F	K	D	K	S	A	E	D	A	K	A	I	Y	D	F	T	D	T	V	I	R	I	R	N	R	H	N	D	V	I	P	T	M	A	Q	G	V	I	E	Y	K	E	S	F	D	P	V	T	S	Q	N	V	Q	Y	F	L	D	R	F	Y	M
Template Known Secondary structure																			G	G	G	T	T	S		T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.				.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.											.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	N	A	S	W	A	Q	L	R	E	L	L	T	T	F	R	.	.	.	L	Q	L	T	E	P	G	L	R	P	A	L	E	A	S	C	E	E	Y	S	.	.	.	.	.	.	.	.	.	.	A	K	F	G	F	P	V	K	L	D	Y	Q	L	P	P	R	L	V	P	S	H	Q	A	I	H	L	L	Q	I	A
Query Conservation																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	I	S	I	R	M	L	L	N	Q	H	S	L	L	F	G	H	I	G	S	I	N	P	N	C	N	V	L	E	V	I	K	D	G	Y	E	N	A	R	R	L	C	D	L	Y	Y	I	N	S	P	E	L	E	L	E	E	L	N	A	K	S	P	G	Q	P	I	Q	V	V	Y	V	P	S	H	L	Y	H	M	V
Template Known Secondary structure																				B	T	T	B																										S												S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.									.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.																									.	.	.	550	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	A	L	S	N	A	L	K	H	.	.	.	.	.	.	.	.	S	Q	A	S	E	V	V	V	T	V	A	Q	N	D	N	Q	V	K	L	T	V	Q	D	N	G	C	G	V	P	E	N	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	N	H	Y
Query Conservation												.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	L	F	K	N	A	M	R	A	T	M	E	H	H	A	N	R	G	V	Y	P	P	I	Q	V	H	V	T	L	G	N	E	D	L	T	V	K	M	S	D	R	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	T	A	P	R	P	R	V	E	T	S	R	A	V	P	L	A	G	F	G	Y
Template Known Secondary structure																S	T	T	T	T													S	S										S									G	G	G	G		T	T	T	T							S	S			S				S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	I	I	M	R	D	R	A	Q	S	L	R	G	D	C	R	V	R	R	R	E	S	G	G	T	E	V	V	V	T	F	I	P	E	K	T	F	T	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	P	I	S	R	L	Y	A	Q	Y	F	Q	G	D	L	K	L	Y	S	L	E	G	Y	G	T	D	A	V	I	Y	I	K	A	L	S	T	D	S	I	E
Template Known Secondary structure													T	T									T	T	T										S	S	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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