Job Description P0AFA2 Confidence 99.32% Date Thu Jan 5 11:25:43 GMT 2012 Rank 28 Aligned Residues 100 % Identity 20% Template c2q2eB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Resolution 4.00 Å

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		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.					.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.																		.	.	550	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	Q	I	A	R	E	A	L	S	N	A	L	K	H	S	Q	A	S	.	.	.	.	E	V	V	V	T	V	A	Q	N	D	.	N	Q	V	K	L	T	V	Q	D	N	G	C	G	V	P	E	N	A	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	H	Y	G	M	I	I	M
Query Conservation																					.	.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.											.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	T	T	V	K	E	A	V	D	N	A	L	D	A	C	E	E	A	G	I	L	P	D	I	L	V	Q	V	E	R	T	G	P	D	Y	V	T	V	I	I	E	D	N	G	P	G	I	V	R	E	Q	I	P	K	V	F	A	K	L	L	Y	G	F	H	A	L	K	S	R	G	Q	Q	G	I	G	I	S	A	A
Template Known Secondary structure																		T	T	T	S		S											T	T	T										S					G	G	G						S													S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure												.								.
Query SS confidence												.								.
Query Sequence		R	D	R	A	Q	S	L	R	G	D	.	C	R	V	R	R	R	E	.	S	G	G	T	E	V	V	V	T	F	I	P	E	K	T	F	T	D	V	Q	G	D	T	H	E
Query Conservation												.								.
Alig confidence												.								.
Template Conservation
Template Sequence		V	L	Y	A	Q	M	T	A	G	R	H	T	K	I	L	S	K	T	S	P	T	A	P	A	H	Y	Y	E	L	M	I	N	T	S	T	N	E	P	D	I	L	V	D	E
Template Known Secondary structure									T											S	S	S	S											S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions