Job Description P0AFA2 Confidence 99.30% Date Thu Jan 5 11:25:43 GMT 2012 Rank 29 Aligned Residues 86 % Identity 22% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

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		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.					.	.	520	.	.	.	.	.				.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.																				.	.	550	.	.
Predicted Secondary structure																					.	.	.	.									.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.									.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	Q	I	A	R	E	A	L	S	N	A	L	K	H	S	Q	A	S	.	.	.	.	E	V	V	V	T	V	A	Q	.	.	.	N	D	N	Q	V	K	L	T	V	Q	D	N	G	C	G	V	P	E	N	A	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	H	Y	G
Query Conservation																					.	.	.	.									.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.									.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	X	Y	G	L	G
Template Known Secondary structure																T	T	G	G	G	T														T	T	T	T										S					G	G	G							S	S	S			S			S	S	S			S			S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		M	I	I	M	R	D	R	A	Q	S	L	R	G	D	.	C	R	V	R	R	R	E	S	G	G	T	E	V	V	V	T	F	I
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L
Template Known Secondary structure																								T	T		S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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