 |
Job Description | P0AFA2 | Confidence | 97.76% | Date | Thu Jan 5 11:25:43 GMT 2012 |
Rank | 48 | Aligned Residues | 53 |
% Identity | 26% | Template | c1ei1B_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:dna gyrase b; |
PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center
|
Resolution | 2.30 Å |
|
  |   |
499 | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | |
|
|
. | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | Q | I | A | R | E | A | L | S | N | A | L | K | H | S | . |
. |
. |
Q | A | S | E | V | V | V | T | V | A | Q | N | D | N | Q | V | K | L | T | V | Q | D | N | G | C | G | V | P | E | N | A | I | R | S | N | H | Y | G | M | I |
Query Conservation |   |
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |   | . | . | . |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |
|   |
|   |
|   |   |
|
| . | . | . |   |
|   |
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | H | H | M | V | F | E | V | V | D | N | A | I | D | E | A | L | A | G | H | C | K | E | I | I | V | T | I | H | A | D | N | . |
. |
. |
S | V | S | V | Q | D | D | G | R | G | I | P | T | G | I | H | P | E | E | G | V | S | A | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |  |
| T | T | S | . | . | . |
|  |  |  |  |  |
| S | S |
|
|
|
| S | B |
| T | T | T | S | S | B |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
436 | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | |
|
|
. | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|