Job Description P25888 Confidence 99.94% Date Thu Jan 5 11:42:41 GMT 2012 Rank 74 Aligned Residues 329 % Identity 19% Template c3mwyW_ PDB info PDB header:hydrolase Chain: W: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler Resolution 3.70 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		E	P	T	P	I	Q	Q	Q	A	I	P	A	V	L	E	.	.	.	.	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																			.	.	.	.	.	.								.
Template Conservation																																																							.	.	.	.	.	.								.
Template Sequence		E	L	R	D	F	Q	L	T	G	I	N	W	M	A	F	L	W	S	K	G	D	N	G	I	L	A	D	E	M	G	L	G	K	T	V	Q	T	V	A	F	I	S	W	L	I	F	A	R	R	Q	N	G	P	.	.	.	.	.	.	H	I	I	V	V	P	L	.	S	T	M	P	A	W	L	D	T	F	E	K	W
Template Known Secondary structure					T														T	T	T									T	T	S	S	T	T															S			S		.	.	.	.	.	.							T	.	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.								.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.							.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M	K	L	R	G	.	.	.	.	.	.	.	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	H	D	I	R
Query Conservation																												.	.	.	.	.	.	.
Alig confidence						.	.																					.	.	.	.	.	.	.																						.	.
Template Conservation						.	.																																																	.	.
Template Sequence		A	P	D	L	.	.	N	C	I	C	Y	M	G	N	Q	K	S	R	D	T	I	R	E	Y	E	F	Y	T	N	P	K	T	M	K	F	N	V	L	L	T	T	Y	E	Y	I	L	K	D	R	A	E	L	G	S	.	.	I	K	W	Q	F	M	A	V	D	E	A	H	R	L	K	N	A	E	S	S	L	Y	E	S
Template Known Secondary structure		S	T	T		.	.								S	S											S		S								S						T	T					T						T	.	.	S								T	T	G	G	G	G			S	S	S
Template Predicted Secondary structure						.	.																																																	.	.
Template SS confidence
		448	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																											.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	I	K	A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.
Template Sequence		L	N	S	F	.	.	.	K	V	A	N	R	M	L	I	T	G	T	P	L	Q	N	N	I	K	E	L	A	A	L	V	N	F	L	M	P	G	R	F	N	Q	D	E	E	Q	E	E	Y	I	H	D	L	H	R	R	I	Q	P	F	I	L	R	R	L	K	K	D	V	E	K	S	L	P	S	K	T	E	R	I	L
Template Known Secondary structure			T	T	S	.	.	.										S				S	S		S												S						T	T												T	T	G	G	G						G	G	G	G	T	T	T	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		529	530	.	.				.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
		226	.	.																																																														.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		F	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	R	K	R	E	L	L	S	H	M	I	G	K	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		R	V	E	L	S	D	V	Q	T	E	Y	Y	K	N	I	L	T	K	N	Y	S	F	S	L	L	N	I	M	N	E	L	K	K	A	S	N	H	P	Y	L	F	D	N	A	E	E	R	V	L	Q	K	F	M	T	R	E	N	V	L	R	G	L	I	M	S	S	G	K	M	V	L	L	D	Q	L	L	T	R	L	K
Template Known Secondary structure																								T															G	G	G	S	S	S												S										T															T
Template Predicted Secondary structure
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	.	.	.	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N
Query Conservation																																																										.	.	.
Alig confidence																																																										.	.	.
Template Conservation
Template Sequence		K	D	G	H	R	V	L	I	F	S	Q	M	V	R	M	L	D	I	L	G	D	Y	L	S	I	K	G	I	N	F	Q	R	L	D	G	T	V	P	S	A	Q	R	R	I	S	I	D	H	F	N	S	P	D	S	N	D	F	V	F	L	L	S	T	R	A	G	G	L	G	I	N	L	M	T	A	D	T	V	V	I
Template Known Secondary structure		T	T	T								S																T							S	T	T	S											T	T	S	S	T	T		S												T	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																									.	.											.	.
Query SS confidence																									.	.											.	.
Query Sequence		Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	.	.	G	E	A	L	S	L	V	C	V	D	.	.	E	H	K	L	L	R	D	I	E	K	L	L	K
Query Conservation																									.	.											.	.
Alig confidence																									.	.											.	.
Template Conservation
Template Sequence		F	D	S	D	W	N	P	Q	A	D	L	Q	A	M	A	R	A	H	R	I	G	Q	K	N	H	V	M	V	Y	R	L	V	S	K	D	T	V	E	E	E	V	L	E	R	A	R	K	K	M	I
Template Known Secondary structure		S	S			S		S								T	T	T	S		S	S			S										T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.