Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 12 Aligned Residues 381 % Identity 29% Template c3i5yA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp Resolution 2.49 Å

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		1	.	.	.	.	.	.					.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure									.	.	.	.																																	.	.
Query SS confidence									.	.	.	.																																	.	.
Query Sequence		M	S	F	D	S	L	G	.	.	.	.	L	S	P	D	I	L	R	A	V	A	E	Q	G	Y	R	E	P	T	P	I	Q	Q	Q	A	I	P	A	V	L	E	G	R	.	.	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R
Query Conservation									.	.	.	.																																	.	.
Alig confidence									.	.	.	.																																	.	.																															.	.
Template Conservation																																																																													.	.
Template Sequence		V	T	L	D	S	L	L	E	E	G	V	L	D	K	E	I	H	K	A	I	T	R	M	E	F	P	G	L	T	P	V	Q	Q	K	T	I	K	P	I	L	S	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	.	.	S	Q	Y
Template Known Secondary structure											T	S	S										T	T			S	S															S	S										T	T	S																	T	T	T	S	.	.	S	T	T
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.
Predicted Secondary structure																												.	.	.	.	.																																															.
Query SS confidence																												.	.	.	.	.																																															.
Query Sequence		P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	.	.	.	.	.	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	.	L	D
Query Conservation																												.	.	.	.	.																																															.
Alig confidence																												.	.	.	.	.																																															.
Template Conservation
Template Sequence		M	V	K	A	V	I	V	A	P	T	R	D	L	A	L	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N	K	F	F	R
Template Known Secondary structure		S								S	S																	T		G	G	G	G	G	S							T	T	S															S																						T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence		Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	H	D	I	R	R	V	L	T	.	.	.	.	.	.	.	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K	A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T
Query Conservation																													.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	D	Y	K	V	L	D	E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	T	I	S	G	I	L	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K	N	E	P	E	A	H
Template Known Secondary structure		T								T					T	S	T	T	T																S	S		T	T									S	S			T						T	G	G	G			S	S							S	S		S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.											.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																							.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.																																							.	.	.
Query Sequence		Q	H	V	H	F	V	D	.	.	.	.	.	.	.	.	.	.	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	.	.	.	K	D	G	I	R	S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L
Query Conservation									.	.	.	.	.	.	.	.	.	.																																							.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation
Template Sequence		E	R	I	D	Q	S	V	V	I	S	E	K	F	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L	V
Template Known Secondary structure		T	T									S	S	S	T																	T	T	T									S	S																T	T	T	S						S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N	Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	G	E	A	L	S	L	V	C	V	D	E	H	K	L	L	R	D	I	E	K	L	L	K	K	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	P	S	E	L	A	N	Y	I	H	R	I	G	R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C	K	D	E	L	P	F	V	R	E	L	E	D	A	K	N	I	V	I
Template Known Secondary structure								S	S							G	G	G	T	S	S				T	T								S			S	S	T								T	T	S	S		T	T											G	G	G
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	I	A	I	P	G	Y	E	P	D	P	S	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	Q	E	K	Y	E	P	S	E	E	I	K	S	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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