Job Description P25888 Confidence 94.81% Date Thu Jan 5 11:42:41 GMT 2012 Rank 171 Aligned Residues 120 % Identity 8% Template c3hgtA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Resolution 2.20 Å

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		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		N	S	G	K	F	S	V	L	R	D	L	I	N	L	V	Q	E	Y	E	T	E	T	A	I	V	C	R	P	G	R	T	M	D	L	L	E	A	L	L	L	G	N	K	V	H	I	K	R	Y	D	G	H	S	I	D	F	S	C	T	V	H	L	F	S	S	E	.	.	.	.	.	.	.	G	I	N	F	T	K	Y
Template Known Secondary structure		T															T	T	S										S	T											T	T	S	S						S	S	S						S								S	S	.	.	.	.	.	.	.				T	T	T	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	G	L	D	I	E	E	L	P	H	V	V	N	Y	E	L	P	N	V	P	.	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	G	E	A	L	S	L	V	C	V	D	E	H	K	L	L	R
Query Conservation																						.
Alig confidence																						.										.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		P	I	K	S	K	A	R	F	D	M	L	I	C	L	D	T	T	V	D	T	S	Q	K	D	I	Q	Y	L	L	Q	.	.	.	.	.	Y	K	A	P	I	V	R	L	V	A	I	N	S	I	D	H	C	R
Template Known Secondary structure							S			S						S	T	T			T	T	S									.	.	.	.	.											T	T	S
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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