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Job DescriptionP25888
Confidence99.91%DateThu Jan 5 11:42:41 GMT 2012
Rank87Aligned Residues312
% Identity17%Templatec3crw1_
PDB info PDB header:hydrolaseChain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo"
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRS
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Template Sequence  LKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSL. . . . . . . . . . . . EVKPKVLFVVRTHNEFYPIYRDLTKI. . . REITF
Template Known Secondary structure  TT


SSSST............TT
SSSSGGGS
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   11........20.........30.........40.... .....50.........60.........70 .....
 
   107..110.........120.........130.........140.........150.........160.........
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Query Sequence  LVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHD. . . . . . . . . . . . . . . . .
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Template Conservation    
 
                
 
 
   
                 

 

 
 
               
        
Template Sequence  SFLVGKPSSCLESENSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSK
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STTT





TTTT
ST
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STTTGGGSGGG
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S
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   7980.........90.........100.........110.........120.........130.........140.........150........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation            
                                                                     
Template Sequence  SEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQKIHIGSILRFFSLLSIGSFIPFSY
Template Known Secondary structure  SSTTT



SS

SS




TTT



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   210.........220.........230.........240.........250.........260.........270.........280.........
 
   170.........180.........190.........200.........210.........220.........230
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Query Sequence  . . . . . . . . . . . IRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKK. . . . . . . .
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Template Conservation                              
 

         
                                      
Template Sequence  SKRLVIKNPEISYYLNLLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMR
Template Known Secondary structure  TT


STTTSGGGG
TT

SS


TT


S
SSS

S



S



TTT
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   294.....300.........310.........320.........330.........340.........350.........360.........370...
 
   231........240.........250.........260.........270.........280.........290......... 300...
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Query Sequence  . . . . . RKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL. . VATD
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Template Sequence  SDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI. . . . . . SLPKYVESEDSSVEDLYSAISANNKVLIGSVGKG
Template Known Secondary structure 
TSSSSSTT
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TTSSS

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   374.....380.........390.........400.........410... ......420.........430.........440.......
 
   304.....310... ......320..... ....330.........340........
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Query Sequence  IAARGLDIEE. . . . . LPHVVNYELPNV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PEDYVHRIGRTGRAAATGEALSL
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Template Sequence  KLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWL
Template Known Secondary structure  SS
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SSSS
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STTT

SSSTTTTT

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   448.450.........460.........470.........480.........490.........500.........510.........520.......
 
   349350.........
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Query Sequence  VCVDEHKLLRD
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Template Conservation   
 
       
Template Sequence  LDKRFESLYWK
Template Known Secondary structure  SGGGGS
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   528.530........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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