Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 14 Aligned Residues 350 % Identity 34% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	S	L	G	L	S	P	D	I	L	R	A	V	A	E	Q	G	Y	R	E	P	T	P	I	Q	Q	Q	A	I	P	A	V	L	E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		K	F	D	D	M	E	L	D	E	N	L	L	R	G	V	F	G	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	G	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	.	.	.	.	.	.	S	V	K	A	P	Q	A	L	M	L
Template Known Secondary structure			G	G	G	G	T											T	T	T			S														T	T									T	T	S	S															T	.	.	.	.	.	.	T			S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	T	R	E	L	A	L	Q	I	Q	K	V	V	M	A	L	A	F	H	M	D	I	K	V	H	A	C	I	G	.	.	.	.	.	.	.	.	.	.	.	L	R	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	F	R	T	D	K	I	K	M	F	I	L	D	E	A	D	E	M
Template Known Secondary structure			S	S															T	S	S	S										.	.	.	.	.	.	.	.	.	.	.		S	S		S															T	T		S			T	T								S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.												.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		L	D	M	G	F	I	H	D	I	R	R	V	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K	A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	.	K	R	E	L	L	S	H	M	I
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		L	S	S	G	F	K	E	Q	I	Y	Q	I	F	T	L	L	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	K	Y	E	C	L	T	D	L	Y
Template Known Secondary structure				T	T												S		T	T								S															S	S													S	T	T										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	R	S	G	S	S	R	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	Y
Template Known Secondary structure				S			S							S	S														T	T								T	T	S													T	T	T	S		S						S	G	G	G	S	S					S							S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	G	E	A	L	S	L	V	C	V	D	E	H	K	L	L	R	D	I	E	K	L	L	K	K	E	I	P	R	I	A	I	P
Query Conservation
Alig confidence																				.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		D	L	P	A	N	K	E	N	Y	I	H	R	I	G	R	K	G	V	.	.	.	.	.	.	A	I	N	F	V	T	N	E	D	V	G	A	M	R	E	L	E	K	F	Y	S	T	Q	I	E	E	L	P	S	D
Template Known Secondary structure		S			S	S	G	G	G	G										.	.	.	.	.	.							S	S	S											T	T								S
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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