Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 42 Aligned Residues 271 % Identity 19% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	.	.	.	.	.	.	.	.	L	K	R	R	L	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	.	.	.	.
Template Known Secondary structure		T	T									T	T	T			T	T	T										.	.	.	.	.	.	.	.			T	T								S	S											T	T	T	S							T	T		S					.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.									.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	H	D	I	R	R	V	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																					.
Template Conservation		.	.	.	.	.	.	.																					.
Template Sequence		.	.	.	.	.	.	.	G	R	E	I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	.	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	M	G	E	A	A	A	I	F	M	T	A	T	P	P	G	S	T	D	P
Template Known Secondary structure		.	.	.	.	.	.	.		S	S																		.	S						S						S	T	T			S																	T	S								S	S		T	T				S
Template Predicted Secondary structure		.	.	.	.	.	.	.																					.
Template SS confidence
									253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I	H
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	Q	S	N	S	P	I	E	D	I	E	R	E	I	P	E	R	S	W	N	T	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	S	I	K	A	G	N	D	I	A	N	C	L	R	K	S	G	K	R	V	I	Q	L	S
Template Known Secondary structure		S				S	S											S	S				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S							S	S													T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																														.
Template Sequence		R	K	T	.	.	.	.	F	D	T	E	Y	P	K	T	K	L	T	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	R	.	A	G	R	V	I	D	P	R	R	C	L	K	P	V	I	L	T	D	G	P	E	R	V	I	L	A	G	P	I	P	V	T	P	A	S	A	A	Q	R	R	G	R	I
Template Known Secondary structure		T	T	T	.	.	.	.					T						S			S						G	G	G	G	T	T					.		S																S	S	S																						T	S
Template Predicted Secondary structure					.	.	.	.																														.
Template SS confidence
		387	.	.					390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	A	A	T	G	E	A	L	S	L	V	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	N	P	A	Q	E	D	D	Q	Y	V	F	S
Template Known Secondary structure		S		S			S	S
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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