Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 18 Aligned Residues 337 % Identity 22% Template c2va8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		M	S	F	D	S	L	G	L	S	P	D	I	L	R	A	V	A	E	Q	G	Y	R	E	P	T	P	I	Q	Q	Q	A	I	P	A	.	V	L	E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L
Query Conservation																																				.
Alig confidence																																				.																														.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		M	P	I	E	D	L	K	L	P	S	N	V	I	E	I	I	K	K	R	G	I	K	K	L	N	P	P	Q	T	E	A	V	K	K	G	L	L	E	G	N	R	L	L	L	T	S	P	T	G	S	G	K	T	L	I	A	E	M	G	I	I	S	F	L	.	.	.	.	.	.	.	.	L	K	N	G	G	K	A	I
Template Known Secondary structure			B	G	G	G	S	S	S										T	T	S			B											T	T	T	T	T	T									T	T	S															.	.	.	.	.	.	.	.			S		S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D
Query Conservation
Alig confidence																						.																		.	.	.
Template Conservation																						.																		.	.	.
Template Sequence		Y	V	T	P	L	R	A	L	T	N	E	K	Y	L	T	F	K	D	W	E	.	L	I	G	F	K	V	A	M	T	S	G	D	Y	D	T	D	D	.	.	.	A	W	L	K	N	Y	D	I	I	I	T	T	Y	E	K	L	D	S	L	W	R	H	R	P	E	W	L	N	E	V	N	Y	F	V	L	D	E	L	H
Template Known Secondary structure					S													G	G	G	G	.	G	G	T								S		S	S	S			.	.	.	G	G	G	G	G		S																		G	G	G	G	G								S	G	G
Template Predicted Secondary structure																						.																		.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.													.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	M	L	D	M	G	F	I	H	D	I	R	R	V	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K	A	L	A	E	K	L	.	.	.	.	.	.	.	.	.	.	.	.	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		Y	.	L	N	D	P	E	R	G	P	V	V	E	S	V	T	I	R	A	K	R	R	N	L	L	A	L	S	A	T	I	S	N	Y	K	Q	I	A	K	W	L	G	A	E	P	V	A	T	N	W	R	P	V	P	L	I	E	G	V	I	Y	P	E	R	K	K	K	E	Y	N	V	I	F	K	D	N	T	T	K	K
Template Known Secondary structure		G	.	G	G		T	T	T													T	S							S			T	T									T										S	S											S	S	T	T							T	T	S
Template Predicted Secondary structure			.
Template SS confidence
		149		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																																					.	270	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	H	G	D	D	A	I	I	A	Y	T	L	D	S	L	S	K	N	G	Q	V	L	V	F	R	N	S	R	K	M	A	E	S	T	A	L	K	I	A	N	Y	M	N	F	V	S	L	D	E	N	A	L	S	E	I	L	K	Q	L	D	D	I	E	E	G	G	S	D	E	K	E	L	L	K	S	L	I	S	K	G
Template Known Secondary structure				S	S	S											T	T	T								S	S														T	T	T	S	S																T			S	S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N	Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	.	.	A	T	G	E	A	L	S	L	V
Query Conservation																																																																							.	.
Alig confidence																																																	.	.	.																				.	.
Template Conservation																																																	.	.	.
Template Sequence		V	A	Y	H	H	A	G	L	S	K	A	L	R	D	L	I	E	E	G	F	R	Q	R	K	I	K	V	I	V	A	T	P	T	L	A	A	G	V	N	L	P	A	R	T	V	I	I	.	.	.	G	D	I	P	I	M	E	Y	K	Q	M	S	G	R	A	G	R	P	G	F	D	Q	I	G	E	S	I	V	V	V
Template Known Secondary structure							T	T	S														T	T		S							G	G	G	G	G	S	S				B	S					.	.	.													T	T	B			T	T	T		S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	K	E
Template Known Secondary structure		S		G	G
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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