Job Description P25888 Confidence 89.83% Date Thu Jan 5 11:42:41 GMT 2012 Rank 252 Aligned Residues 86 % Identity 23% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	.	.	.	.	.	I
Query Conservation																																																																												.	.	.	.	.
Alig confidence																.																.	.	.	.	.	.	.												.	.																									.	.	.	.	.
Template Conservation																.																.	.	.	.	.	.	.												.	.
Template Sequence		I	L	L	V	G	I	Q	G	S	G	K	T	T	T	.	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	.	.	.	.	.	.	.	A	L	I	A	A	D	T	Y	R	P	A	.	.	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V
Template Known Secondary structure								S	S	S	S	T	T			.																.	.	.	.	.	.	.						S				T	T	.	.	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T
Template Predicted Secondary structure																.																.	.	.	.	.	.	.												.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H
Template Known Secondary structure							T	T	S	S		S									S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions