Job Description P25888 Confidence 94.78% Date Thu Jan 5 11:42:41 GMT 2012 Rank 173 Aligned Residues 86 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M
Query Conservation
Alig confidence																.																.	.	.	.	.	.	.												.	.
Template Conservation																.																.	.	.	.	.	.	.												.	.
Template Sequence		I	M	F	V	G	L	Q	G	S	G	K	T	T	T	.	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	.	.	.	.	.	.	.	C	L	I	C	A	D	T	F	R	A	G	.	.	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S
Template Known Secondary structure							S	T	T	S	S					.											T	T				.	.	.	.	.	.	.								S	S	S		.	.													T										S
Template Predicted Secondary structure																.																.	.	.	.	.	.	.												.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		121							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	.	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions