Job Description P25888 Confidence 94.58% Date Thu Jan 5 11:42:41 GMT 2012 Rank 175 Aligned Residues 86 % Identity 28% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N	P	Q	M	M
Query Conservation
Alig confidence																.																.	.	.	.	.	.	.												.	.
Template Conservation																.																.	.	.	.	.	.	.												.	.
Template Sequence		W	F	L	V	G	L	Q	G	S	G	K	T	T	T	.	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	.	.	.	.	.	.	.	L	L	V	A	A	D	T	Q	R	P	A	.	.	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R
Template Known Secondary structure								T	T	S	S					.											T	T				.	.	.	.	.	.	.							S	S				.	.													T								T	T
Template Predicted Secondary structure																.																.	.	.	.	.	.	.												.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		121							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	.	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L
Template Known Secondary structure											T		S										S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions