Phyre 2 alignment of P25888 with c2f55C

Job Description P25888
Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012

Rank 57 Aligned Residues 262

% Identity 18% Template c2f55C_

PDB info PDB header:hydrolase/dna Chain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna

Resolution 3.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template Sequence	T	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	.	G	I	D	P	N	I	R	T	G	V	.	.	.	.
Template Known Secondary structure	S		B								S	S	S	S	T	T	T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	T	T	S								S		S														S	.	.	.	S								S	S	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.													220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	H	D	I	R	R	V	.	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K
Query Conservation																																																										.
Alig confidence	.	.	.																		.	.	.																																			.																					.	.
Template Conservation	.	.	.																		.	.	.																																																								.	.
Template Sequence	.	.	.	R	T	I	T	T	G	G	S	I	T	Y	S	T	Y	G	K	F	.	.	.	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.
Template Known Secondary structure	.	.	.								S										.	.	.			T	T	S	S	S	T	T			S					T	T	T	T			S											T	T	S	S	T	T	T	T									S	S		T	T		.	.
Template Predicted Secondary structure	.	.	.																		.	.	.																																																								.	.
Template SS confidence
				257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	P	H	P	N	I	E	E	I	G	L	S	N	N	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	K	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	T	G	L	G	L	N	A	V	A	Y
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T		B						S		S	S				T	T									T	T	S	B						S	S														T	T						B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.																		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	E	E	L	P	H	V	V	N	Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.
Template Sequence	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	P	I	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R
Template Known Secondary structure		S	S	S		T	T		S	.	.	.	.	.	.	.		S	S	S	S	B						S								S														B				S	S	S		B									B								T	T	T	S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
	392	.	.	.	.	.	.	.	400								.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

	339	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	A	T	G	E	A	L	S	L	V	C
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	G	R	S	G	I	Y	R	F	V	T	P
Template Known Secondary structure	.	S	S							S		S
Template Predicted Secondary structure	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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