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Job DescriptionP25888
Confidence100.00%DateThu Jan 5 11:42:41 GMT 2012
Rank1Aligned Residues369
% Identity40%Templatec2db3D_
PDB info PDB header:hydrolase/rnaChain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL
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Template Sequence  HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL. ELGRPQVVIV
Template Known Secondary structure  STTSS


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   246...250.........260.........270.........280.........290.........300.........310.... .....320....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM
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Template Sequence  SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM
Template Known Secondary structure 
SSTTTSS


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   325....330.........340.........350.........360.........370.........380.........390.........400....
 
   162.......170..... ....180.........190.........200.........210.........220.........230.........
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Query Sequence  LDMGFIHDIRRVLT. . KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM
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Template Sequence  LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEI
Template Known Secondary structure  TST
TTS
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GGG
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   405....410.........420.........430.........440.........450.........460.........470.........480....
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN
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Template Sequence  LSEQA. DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN
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   485.... 490.........500.........510.........520.........530.........540.........550.........560...
 
   320.........330.........340.........350 .........360.........370..
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Query Sequence  YELPNVPEDYVHRIGRTGRAAATGEALSLVC. VDEHKLLRDIEKLLKKEIPRIA
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Template Sequence  YDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP
Template Known Secondary structure  SS

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   564.....570.........580.........590.........600.........610.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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