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Job DescriptionP25888
Confidence99.90%DateThu Jan 5 11:42:41 GMT 2012
Rank89Aligned Residues304
% Identity17%Templatec1z63A_
PDB info PDB header:hydrolase/dna complexChain: A: PDB Molecule:helicase of the snf2/rad54 hamily; PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30...... ...40.........50.........60.........70.........80.........90.......
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Query Sequence  REPTPIQQQAIPAVL. . . . EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD
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Template Sequence  ANLRPYQIKGFSWXRFXNKLGFGICLADDXGLGKTLQTIAVFSDAKKENELT. . . . . . . PSLVICPL. SVLKNWEEELSK
Template Known Secondary structure  S


TT




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S.TT
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   442.......450.........460.........470.........480.........490... ......500. ........510...
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL
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Template Sequence  FAPHLRFAVFHEDRSKI. . . . . . . KLEDYDIILTTYAVLLRDTRLKEVEWK. . . YIVIDEAQNIKNPQT. . . KIFKAVKE
Template Known Secondary structure 
TTS

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GGGSSTT
T

...TGGGGS
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   514.....520.........530 .........540.........550....... ..560.........570.. .......580
 
   178.180......... 190.........200.........210......
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Query Sequence  PAKRQNLLFSAT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FSDDIKALAEKLLHNPLEIEVARRNTA
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Template Sequence  LKSKYRIALTGTPIENKVDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKGDNXAKEELKAIISPFILRRTKYDKAIINDL
Template Known Secondary structure  S

SS
STT
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TTTTT
TTT


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   581........590.........600.........610.........620.........630.........640.........650.........660
 
   217..220.........230.........240..
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Query Sequence  SDQVTQHVHFVDKKRKRELLSHMIGK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PDKIETNVYCNLTPEQAAXYKAEVENLFNNIDSVTGIKRKGXILSTLLKLKQIVDHPALLKGGEQSVRRSGKXIRTXEII
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S


TTTTTT

TTT
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   661........670.........680.........690.........700.........710.........720.........730.........740
 
   243......250.........260... ......270.........280.........290.. .......300.........310......
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Query Sequence  . . . . GNWQQVLVFTRTKHGANHLAE. QLNKDGIRSAAIHGNKSQGARTRALADFK. SGDIRVLVATDIAARGLDIEELPH
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Template Sequence  EEALDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGFGINLTSANR
Template Known Secondary structure  TTT


S
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TTS

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TT
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   741........750.........760.........770.........780.........790.........800.........810.........820
 
   317..320.........330.........340.........
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Query Sequence  VVNYELPNVPEDYVHRIGRTGRAAATGEALSLV
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Template Sequence  VIHFDRWWNPD. . . QATDRVYRIGQTRNVIVHK
Template Known Secondary structure  SS

S


...TTTTTTTTS
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   822.......830.. .......840.........850.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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