Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 8 Aligned Residues 366 % Identity 27% Template c1xtkA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:probable atp-dependent rna helicase p47; PDBTitle: structure of decd to dead mutation of human uap56 Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	S	L	G	L	S	P	D	I	L	R	A	V	A	E	Q	G	Y	R	E	P	T	P	I	Q	Q	Q	A	I	P	A	V	L	E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		F	R	D	F	L	L	K	P	E	L	L	R	A	I	V	D	C	G	F	E	H	P	S	E	V	Q	H	E	C	I	P	Q	A	I	L	G	M	D	V	L	C	Q	A	K	S	G	M	G	K	T	A	V	F	V	L	A	T	L	Q	Q	L	E	P	.	.	.	.	.	.	V	T	G	Q	V	S	V	L	V	M	C
Template Known Secondary structure		G	G	G	G													T	T																	T	T									S	S	T	T																.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.							110	.	.	.	.	.	.	.	.	.	120
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	.	.	I	N	P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		H	T	R	E	L	A	F	Q	I	S	K	E	Y	E	R	F	S	K	Y	M	P	N	V	K	V	A	V	F	F	G	G	L	S	I	K	K	D	E	E	V	L	K	K	N	C	P	H	I	V	V	G	T	P	G	R	I	L	A	L	A	R	N	K	S	L	N	L	K	H	I	K	H	F	I	L	D	E	A	D	K
Template Known Secondary structure		S																T	T	T		T	T								T	T	S												S			S															T	T	S	S			T	T								S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		M	L	D	M	G	F	I	H	D	I	R	R	V	L	T	K	L	P	A	K	R	Q	N	L	L	.	.	F	S	A	T	F	S	D	D	I	K	A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	K	R	E	L	L	S	H
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		M	L	E	Q	L	D	M	R	R	D	V	Q	E	I	F	R	M	T	P	H	E	K	Q	V	M	M	F	S	A	T	L	S	K	E	I	R	P	V	C	R	K	F	M	Q	D	P	M	E	I	F	V	D	D	E	T	K	L	T	L	H	G	L	Q	Q	Y	Y	V	K	L	K	D	N	E	K	N	R	K	L	F	D
Template Known Secondary structure				S	S													T	S		S	S	S							S	S			T	T										S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I	H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	D	V	L	E	F	N	Q	V	V	I	F	V	K	S	V	Q	R	C	I	A	L	A	Q	L	L	V	E	Q	N	F	P	A	I	A	I	H	R	G	M	P	Q	E	E	R	L	S	R	Y	Q	Q	F	K	D	F	Q	R	R	I	L	V	A	T	N	L	F	G	R	G	M	D	I	E	R	V	N	I	A	F
Template Known Secondary structure						S			S							S	S														T	T								S	S	S												T	T			S	S						S				T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		N	Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	G	E	A	L	S	L	V	.	C	V	D	E	H	K	L	L	R	D	I	E	K	L	L	K	K	E	I	P	R	I	A	I	P
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		N	Y	D	M	P	E	D	S	D	T	Y	L	H	R	V	A	R	A	G	R	F	G	T	K	G	L	A	I	T	F	V	S	D	E	N	D	A	K	I	L	N	D	V	Q	D	R	F	E	V	N	I	S	E	L	P	D	E
Template Known Secondary structure			S	S			S	S	T	T						S		B		S	S	S												S	T	T												T	T								S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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