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Job DescriptionP25888
Confidence100.00%DateThu Jan 5 11:42:41 GMT 2012
Rank5Aligned Residues358
% Identity38%Templatec1hv8B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2.......10.........20.........30......... 40.........50.........60.........70.........80
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Query Sequence  SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR. DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI
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Template Sequence  NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV. . . . . . . NENNGIEAII
Template Known Secondary structure  SGGGSS

T

S

T
S

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   7..10.........20.........30.........40.........50.........60......... 70.........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
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Template Sequence  LTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNAN. IVVGTPGRILDHINRGTLNLKNVKYFILDEADE
Template Known Secondary structure 
S

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TTS
T
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T
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   80.........90.........100.........110.........120..... ....130.........140.........150........
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
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Template Sequence  XLNXGFIKDVEKILNACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAKINANIEQSYVEV. . . . . NENERFEALCRL
Template Known Secondary structure  TTTTTS
SS
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S

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   159160.........170.........180.........190.........200.........210.........220. ........230...
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY
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Template Sequence  LKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINY
Template Known Secondary structure 
STT


SSTTTT


SSS
TSSS
TT


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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   321........330.........340.........350.........360.........370..
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Query Sequence  ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIA
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Template Sequence  HLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIERAXKLKIKKLK
Template Known Secondary structure  S

SSSTTT

TTS

STTTT




B
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   314.....320.........330.........340.........350.........360.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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