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Job DescriptionP25888
Confidence100.00%DateThu Jan 5 11:42:41 GMT 2012
Rank16Aligned Residues342
% Identity17%Templatec1gm5A_
PDB info PDB header:helicaseChain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction
Resolution3.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30........ .40.........50.........60.........70.........80..
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Query Sequence  SPDILRAVAEQGYREPTPIQQQAIPAVLEG. . . . . . RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT
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Template Sequence  GKLAEEFIKSLPFK. LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA. . . . . . . . . GFQTAFMV
Template Known Secondary structure  TSSS
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SSSS.........TS

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   355....360........ .370.........380.........390.........400.........410...... ...420....
 
   83......90.........100.........110.........120.... .....130.........140.........150........
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Query Sequence  PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG. . . . GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA
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Template Sequence  PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV. . . . . HFKNLGLVIIDEQ
Template Known Secondary structure  S
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   425....430.........440.........450.........460.........470.........480...... ...490.........
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  DRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH
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Template Sequence  HRFEA. . . . . . . . . . LMNKGKMVDTLVMSATPIP. . RSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVR
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   500.... .....510.........520... ......530.........540.........550.........560.......
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV
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Template Sequence  QEVM. RGGQAFIVYPLIKSAVEMYEYLSKEVFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV
Template Known Secondary structure  TT.TS

B

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SGGGS


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   573... ...580.........590.........600.........610.........620.........630.........640.........650.
 
   319320.... .....330.........340.........350.........360.........370.........380....
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Query Sequence  NYELPN. VPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKA
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Template Sequence  IENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNT. . . . . . DGFKIAEYDLK
Template Known Secondary structure  B
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   663......670.........680.........690.........700.........710.. .......720...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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