Job Description P25888 Confidence 99.93% Date Thu Jan 5 11:42:41 GMT 2012 Rank 81 Aligned Residues 263 % Identity 20% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N
Query Conservation
Alig confidence																		.	.								.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation																		.	.								.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	T	K	V	P	A	A	Y	.	.	.	.	.	.	.	.	.	.	A	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	T	G	.
Template Known Secondary structure		S										T	T	S		T	T	.	.	T							.	.	.	.	.	.	.	.	.	.			T	T								S																									S	S							.
Template Predicted Secondary structure																		.	.								.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.			.	.	.	.	.	.	.											.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	.	H	D	I	R	R	V	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K
Query Conservation																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.															.	.	.																										.																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.															.	.	.																																																					.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	P	V	T	Y	S	T	Y	G	K	F	L	A	D	.	.	.	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		S												T	.	.	.	T	S			T	T	S		S					T	T	T	T			S														T	T	T	T	T		S							S	S		T	T		.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.															.	.	.																																																					.	.
Template SS confidence
											1263	.	.	.	.	.	.	1270	.	.	.	.	.	.				.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I
Query Conservation
Alig confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	A	V	A	Y
Template Known Secondary structure		.	.	.	.	.						T	T								S		S	S				T	T					G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S	S														T	T
Template Predicted Secondary structure		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							1329	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.													1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.																						.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	D	I	E	E	L	P	H	V	V	N	Y	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	V	P	E	D	Y	V	H	R	I	G
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																					.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																					.
Template Sequence		Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G
Template Known Secondary structure			T	T	S		G	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T								.			S																		S	S	S											B									T
Template Predicted Secondary structure											.	.	.	.	.	.	.																					.
Template SS confidence
		1392	.	.	.	.	.	.	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	G	R	A	A	A	T	G	E	A	L	S	L	V	C	V	D
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		R	T	G	R	G	.	R	R	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure		T	S		S	S	.	S							S
Template Predicted Secondary structure							.
Template SS confidence
		1464	.	.	.	.		.	1470	.	.	.	.	.	.	.	.	.	1480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions