Job Description P25888 Confidence 100.00% Date Thu Jan 5 11:42:41 GMT 2012 Rank 49 Aligned Residues 268 % Identity 18% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	D	L	M	A	S	A	Q	T	G	T	G	K	T	A	G	F	T	L	P	L	L	Q	H	L	I	T	R	Q	P	H	A	K	G	R	R	P	V	R	A	L	I	L	T	P	T	R	E	L	A	A	Q	I	G	E	N	V	R	D	Y	S	K	Y	L	N	I	R	S	L	V	V	F	G	G	V	S	I	N
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	.	G	V	D	P	N	I	R	T	G	V	.	.	.	.
Template Known Secondary structure		S										T	T	S		T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	T	T	T								S																	.	.	.	S								S	S	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.											.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.													220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		P	Q	M	M	K	L	R	G	G	V	D	V	L	V	A	T	P	G	R	L	L	D	L	E	H	Q	N	A	V	K	L	D	Q	V	E	I	L	V	L	D	E	A	D	R	M	L	D	M	G	F	I	H	D	I	R	R	V	.	L	T	K	L	P	A	K	R	Q	N	L	L	F	S	A	T	F	S	D	D	I	K
Query Conservation																																																											.
Alig confidence		.	.	.																								.	.	.	.																												.																					.	.
Template Conservation		.	.	.																								.	.	.	.																																																	.	.
Template Sequence		.	.	.	R	T	I	T	T	G	S	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	.	.	.	.	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.
Template Known Secondary structure		.	.	.								S												T	T			.	.	.	.					S						T	T	T			S														T	T	T	T	T		S							S	S		T	T		.	.
Template Predicted Secondary structure		.	.	.																								.	.	.	.																																																	.	.
Template SS confidence
					257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	E	K	L	L	H	N	P	L	E	I	E	V	A	R	R	N	T	A	S	D	Q	V	T	Q	H	V	H	F	V	D	K	K	R	K	R	E	L	L	S	H	M	I	G	K	G	N	W	Q	Q	V	L	V	F	T	R	T	K	H	G	A	N	H	L	A	E	Q	L	N	K	D	G	I	R	S	A	A	I
Query Conservation
Alig confidence		.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	V	T	V	P	H	P	N	I	E	E	V	A	L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	.	.	.	.	.	.	.	.	.	.	.	.	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	V	A	L	G	I	N	A	V	A	Y
Template Known Secondary structure		.	.	.	.	.						T	T								S		S	S				T	T					T					.	.	.	.	.	.	.	.	.	.	.	.	S	S							S	S														T	T
Template Predicted Secondary structure		.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360													.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.								.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																			.	.
Query SS confidence																		.	.	.	.	.	.	.																			.	.
Query Sequence		H	G	N	K	S	Q	G	A	R	T	R	A	L	A	D	F	.	.	.	.	.	.	.	K	S	G	D	I	R	V	L	V	A	T	D	I	A	A	R	G	L	.	.	D	I	E	E	L	P	H	V	V	N	Y	E	L	P	N	V	P	E	D	Y	V	H	R	I	G	R	T	G	R	A	A	A	T	G	E	A	L
Query Conservation																		.	.	.	.	.	.	.																			.	.
Alig confidence																		.	.	.	.	.	.	.																			.	.																														.
Template Conservation																																																																										.
Template Sequence		Y	R	G	L	D	V	S	V	I	P	T	S	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	L	P	Q	D	A	V	S	R	T	Q	R	R	G	R	T	G	R	.	G	K	P	G	I	Y	R
Template Known Secondary structure			T	T	S		G	G	G	S		S	S	S	S							T	T						B	S																	S	S	S											B									T	T	B		S	.	S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470
		347	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	A	P
Template Known Secondary structure			S		S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions