Job Description P14176 Confidence 5.92% Date Thu Jan 5 11:33:56 GMT 2012 Rank 32 Aligned Residues 162 % Identity 14% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	L	F	C	I	V	I	G	L	P	L	G	I	W	L	A	R	S	P	R	A	A	K	I	I	R	P	L	L	D	A	M	Q	T	T	P	A	F	V	Y	L	V	P	I	V	M	L	F	G	I	G	N	V	P	G	V	V	V	T	I	I	F	A	L	P	P	I	I	R	L	T	I	L	G	I	N	Q	V
Query Conservation
Alig confidence																																							.	.	.
Template Conservation																																							.	.	.
Template Sequence		A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	.	.	.	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A
Template Known Secondary structure																				T	T		S	S	S					G	G	G							.	.	.										T	T			B
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		873	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.				910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	L	I	E	A	S	R	S	F	G	A	S	P	R	Q	M	L	F	K	V	Q	L	P	L	A	M	P	T	I	M	A	G	V	N	Q	T	L	M	L	A	L	S	M	V	V	I	A	S	M	I	A	V	G	G	L	G	Q	M	V	L	R	G	I	G	R	L	D	M	G	L	A	T	V	G	G	V	G	I
Query Conservation
Alig confidence								.	.	.	.																																	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation								.	.	.	.																																	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		K	D	L	M	D	K	.	.	.	.	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	.	.	.	.	.	.	.	P	L	V	I	S	T	G	A	G	S	G	A	.	.	.	.	.	Q	N	A	V	G	T	G	V	M	G	G	M	V	T
Template Known Secondary structure					T	T	S	.	.	.	.	S				T	T									T	T																	.	.	.	.	.	.	.				T	T		S	S	S				.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.																																	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		950	.	.	.	.	.					.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.								.	.	990	.	.	.	.	.	.	.	.	.						1000	.	.	.	.	.	.	.	.	.	1010	.	.	.
		314	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		V	I	L	A	.	.	I	I	L	D	R	L	T	Q	A	V	G	R	D	S	R	S	R
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure				T	T	T	T	S	S	S	S	S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		1014	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions