Return to main results Retrieve Phyre Job Id

Job DescriptionP77294
Confidence99.70%DateThu Jan 5 12:27:20 GMT 2012
Rank14Aligned Residues118
% Identity16%Templatec2w07B_
PDB info PDB header:cell adhesionChain: B: PDB Molecule:minor pilin subunit papf; PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40. ........50.........60.........70.........80.........90.........100.........110.
Predicted Secondary structure 



.










































Query SS confidence 








.





































































Query Sequence  RVVAKPCTI. QTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIEL
Query Conservation   
   

 
.      
                     
 
 
  
            
             
 



 
Alig confidence 








.
















...













.






















.










Template Conservation 

  
 
 
     
 



 
    
...          
 
 .
                     
.     



 
Template Sequence  NVYIPPCTINNGQNIVVDFGNINPEHV. . . DNSRGEVTKTISIS. CPYGSLWIKVTGNTMGGGQNNVL. ATNITHFGIAL
Template Known Secondary structure 

S



GGG







S

S
S
...SSSS

.






B
SSS
SS.
SSTT
Template Predicted Secondary structure 











...





.













.





Template SS confidence 















































































   910.........20.........30..... ....40......... 50.........60.........70.. .......80...
 
   112.......120.........130.........140........ .150.........160......
Predicted Secondary structure 
















.


Query SS confidence 




































.

















Query Sequence  RDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVN. GNASQGTIEALINVIYTW
Query Conservation                                
      .  

 
   
  
  
 
Alig confidence 










...........














.

















Template Conservation         
  
...........      
 
            
 
 
 

  
 
Template Sequence  YQGKGMSTPLT. . . . . . . . . . . LRSTFTFTSVPFRNGSGILNGGDFRTTASMSMIY
Template Known Secondary structure  SSSSSSB

...........




S

S
S





Template Predicted Secondary structure 





...........











Template SS confidence 























































   86...90...... ...100.........110.........120.........130
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions