Job Description P04391 Confidence 98.54% Date Thu Jan 5 10:58:15 GMT 2012 Rank 46 Aligned Residues 236 % Identity 14% Template c3n58D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form Resolution 2.39 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		L	K	L	L	D	F	T	P	A	E	L	N	S	L	L	Q	L	A	A	K	L	K	A	D	K	K	S	G	K	E	E	A	K	L	T	G	K	N	I	A	L	I	F	E	K	D	S	T	R	T	R	C	S	F	E	V	A	A	Y	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																												.	.																																	.	.	.	.
Template Conservation																																												.	.
Template Sequence		I	S	L	A	D	W	G	R	K	E	L	D	I	A	E	T	E	M	P	G	L	M	A	A	R	E	E	F	G	K	S	Q	P	L	K	G	A	R	I	S	G	S	.	.	L	H	M	T	I	Q	T	A	V	L	I	E	T	L	K	V	L	G	A	E	V	R	W	A	S	C	N	I	F	S	T	Q	D	H	A	A
Template Known Secondary structure		G	G	G												G	G	G												T	T	T		T	T	T	T							.	.	S			S													T	T								S	S	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
															86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	.	.	.	.	.	.	.	I	Q	Y	R	G	Y	G	Q	E	I	V	E	T	L	A	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	I	A	A	T	G	T	P	V	F	A	V	K	G	E	T	L	E	E	Y	W	T	Y	T	D	Q	I	F	Q	W	P	D	G	E	P	S	N	M	I	L	D	D	G	G	D	A	T	M	Y	I	L	I	G	A	R	A	E	A	G	E	D	V	L	S	N	P	Q	S	E	E	E	E	V	L	F	A	Q	I	K
Template Known Secondary structure						T	T	T							T	T													T	T			T	T	S				S					S	S	S														T	T				S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
																																									121	.	.	.	.	.	.		.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	V	P	V	W	N	.	G	L	T	N	E	F	H	.	.	.	.	.	.	.	P	T	Q	L	L	A	D	L	L	T	M	Q	E	H	L	P	G	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.								.	.	.	.	.	.	.						.	.											.
Template Conservation																																																																				.	.											.
Template Sequence		K	R	M	A	A	T	P	G	F	F	T	K	Q	R	A	A	I	K	G	V	T	E	E	T	T	T	G	V	N	R	L	Y	Q	L	Q	K	K	G	L	L	P	F	P	A	I	N	V	N	D	S	V	T	K	S	K	F	D	N	K	Y	G	C	K	E	S	L	.	.	V	D	G	I	R	R	G	T	D	V	.	M
Template Known Secondary structure							S	T	T																S														T				S						T	T	S					T	T											.	.											.
Template Predicted Secondary structure																																																																				.	.											.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.		.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	V	A	P	Q	A	C	W	P	E	A	A	L	V	T	E	C	R	A	L	A	Q	Q	N	G	G	N	I	T	L	T	E	D	V	A	K	G	V	E	G	A	D	F	I	Y	T	D	V
Query Conservation
Alig confidence												.		.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.		.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	G	K	V	A	V	V	C	G	.	Y	.	G	D	V	G	K	G	S	A	Q	S	L	A	G	A	G	A	R	V	K	V	T	E	V	D	P	I	C	A	L	Q	A	A	M	D	G	F	E	.	.	.	.	.	.	.	.	.	.	.	.	V	V	T	L	D	D	A	A	S	T	A	D	I	V	V	T	T	T
Template Known Secondary structure			T	T								.		.	S												T	T	T								S											T	T			.	.	.	.	.	.	.	.	.	.	.	.								G	G	G		S						S
Template Predicted Secondary structure												.		.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.		.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.													.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	S	M	G	E	A	K	E	K	W	A	E	R	I	A	L	L	R	E	Y	Q	V	N	S	K	M	M	Q	L	T	G	N	P	E	V	K	F	L	H	C	L	P	A	F	H	D	D	Q	T	T	L	G	K	K	M	A	E	E	F	G	L	H	G	G	M	E	V	T
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	D	V	I	T	I	D	H	M	R	K	.	M	K	D	M	C	I	V	G	N	I	G	H	F	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	Q
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	B								.	S		T	T							S	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313																		.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340																					.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions