Job Description P04391 Confidence 62.66% Date Thu Jan 5 10:58:15 GMT 2012 Rank 307 Aligned Residues 169 % Identity 12% Template c1nvtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ Resolution 2.35 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																																.															.	.	.	.	.	.	.											.	.
Query SS confidence																																																.															.	.	.	.	.	.	.											.	.
Query Sequence		D	S	T	R	T	R	C	S	F	E	V	A	A	Y	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	Y	G	Q	E	I	V	.	.	.	.	.	.	.	E	T	L	A	E	Y	A	S	V	P	.	.
Query Conservation																																																.															.	.	.	.	.	.	.											.	.
Alig confidence																															.	.	.	.														.															.	.	.	.	.	.	.											.	.
Template Conservation																															.	.	.	.
Template Sequence		E	H	S	F	S	P	I	M	H	N	A	A	F	K	D	K	G	L	N	Y	V	Y	V	A	F	D	V	L	P	.	.	.	.	E	N	L	K	Y	V	I	D	G	A	K	A	L	G	I	V	G	F	N	V	T	I	P	H	K	I	E	I	M	K	Y	L	D	E	I	D	K	D	A	Q	L	I	G	A	V	N	T
Template Known Secondary structure		T	T		S												T	T												G	.	.	.	.	G	G	G	G	G									T								T	T	S	T	T	G	G	G	G	G		S										T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		125	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		V	W	N	.	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	L	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	V	A	P	Q	A	C	W	P	E	A	A	L	V	T	E	C	R
Query Conservation					.
Alig confidence					.																								.	.												.	.																	.							.
Template Conservation																													.	.												.	.																	.							.
Template Sequence		I	K	I	E	D	G	K	A	I	G	Y	N	T	D	G	I	G	A	R	M	A	L	E	E	E	I	G	.	.	R	V	K	D	K	N	I	V	I	Y	G	.	.	A	G	G	A	A	R	A	V	A	F	E	L	A	K	D	N	.	N	I	I	I	A	N	.	R	T	V	E	K	A	E	A	L	A	K	E	I	A
Template Known Secondary structure						T	T																						.	.				S								.	.		S											T	S	S	S	.							.	S	S
Template Predicted Secondary structure																													.	.												.	.																	.							.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	Q	Q	N	G	G	N	I	T	L	T	E	D	V	A	K	G	V	E	G	A	D	F	I	Y	T	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	L	N	K	K	F	G	E	E	V	K	F	S	G	L	D	V	D	L	D	G	V	D	I	I	I	N	A	T
Template Known Secondary structure					T												T	T				T	T								S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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