Return to main results Retrieve Phyre Job Id

Job DescriptionP04391
Confidence87.50%DateThu Jan 5 10:58:15 GMT 2012
Rank199Aligned Residues115
% Identity10%Templatec1llcA_
PDB info PDB header:oxidoreductase(choh(d)-nad(a))Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   155....160.........170.........180.. .......190.........200.........210. ........220.........
Predicted Secondary structure 










..










...






Query SS confidence 



























. .




























. . .

















Query Sequence  NEMTLVYAGDARNNMGNSMLEAAALTGL. . DLRLVAPQACWPEAALVTECRALAQQNGG. . . NITLTEDVAKGVEGADFI
Query Conservation   

 
  


   

  
        
 .. 
    
                    
 ... 
    
  

   



Alig confidence 








.
.















..



.....



















...

















Template Conservation     

 


.
.
 

   
  
       

 
..... 
       
   

           
 
   


 




Template Sequence  DHQKVILVG. D. GAVGSSYAFAMVLQGIAQEIGI. . . . . VDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLV
Template Known Secondary structure 
S

S
.T.TT

SS.....

S
STTS
TTS



B


TTTTTSS
S
Template Predicted Secondary structure 



.
.





.....













Template SS confidence 















































































   1920....... . .30.........40.........50 .........60.........70.........80.........90.
 
   230.........240.........250.........260.........270......
Predicted Secondary structure 




















Query SS confidence 














































Query Sequence  YTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP
Query Conservation 
   
                   
 
    
   
      




Alig confidence 














































Template Conservation 




     
  
  
   
  
   
   
    
 
 

  


Template Sequence  VITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANP
Template Known Secondary structure 
BT


SS
SSS
STTTSTTTTTTTT

S
B
SS
Template Predicted Secondary structure 














Template SS confidence 














































   95....100.........110.........120.........130.........140.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions