Job Description P04391 Confidence 97.27% Date Thu Jan 5 10:58:15 GMT 2012 Rank 75 Aligned Residues 196 % Identity 16% Template c1dxyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-2-hydroxyisocaproate dehydrogenase; PDBTitle: structure of d-2-hydroxyisocaproate dehydrogenase Resolution 1.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	F	E	K	D	S	T	R	T	R	C	S	F	E	V	A	A	Y	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	I	Q	Y	R	G	.	.	.	Y	G	Q	E	I	V	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.														.	.	.	.	.	.	.	.									.	.	.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.														.	.	.	.	.	.	.	.
Template Sequence		I	I	A	Y	G	A	R	V	D	E	I	Q	Y	F	K	Q	W	A	K	D	T	G	N	T	L	E	Y	H	T	.	E	F	L	D	E	N	T	V	E	W	A	K	G	.	.	.	.	.	.	.	.	F	D	G	I	N	S	L	Q	T	T	P	Y	A	A	G	V	F	E	K	M	H	A	Y	G	I	K	F	L	T
Template Known Secondary structure						S			T	T	T																			S	.	S				T	T	G	G	G	G	G	T	T	.	.	.	.	.	.	.	.		S							S	S		B											T	T
Template Predicted Secondary structure																															.														.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
													116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	T	L	A	E	Y	A	S	V	P	V	W	N	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	L	T	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																																																	.
Template Sequence		I	R	N	V	G	T	D	N	I	D	M	T	A	M	K	Q	Y	G	I	R	L	S	N	V	P	A	Y	S	P	A	A	I	A	E	F	A	L	T	D	T	L	Y	L	L	R	N	M	G	K	V	Q	A	Q	L	Q	A	G	D	Y	E	K	A	G	T	F	I	G	K	E	L	G	Q	Q	T	V	G	V	M	G	.
Template Known Secondary structure			S	S	S			T	T	B								T	T							T	T	S																		T	T										T	T						T							G	G	G	S							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	V	A	P	Q	A	C	W	P	E	A	A	L	V	T	E	C	R	A	L	A	Q	Q	N	G	G	N	I	T	L	T	E	D	V	A	K	G	V	E	G	A	D	F	I	Y	T	D	V	W	V	S	M	G	E	A	K	E	K	W
Query Conservation
Alig confidence			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		T	.	G	H	I	G	Q	V	A	I	K	L	F	K	G	F	G	A	K	V	I	A	Y	D	P	Y	P	M	K	G	D	H	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	Y	V	S	L	E	D	L	F	K	Q	S	D	V	I	D	.	.	.	.	L	H	V	P	G	I	E	Q	N	T
Template Known Secondary structure			.	S													T	T								S	S			S	S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S				.	.	.	.							G	G	G	T
Template Predicted Secondary structure			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		153		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	I	A	L	L	R	E	Y	Q	V	N	S	K	M	M	Q	L	T	G	N	P	E	V	K	F	L	H	C	L	P	A	F	H	D	D	Q	T	T	L	G	K	K	M	A	E	E	F	G	L	H	G	G	M	E	V	T	D	E	V	F
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	.	.	.	.	.	.	.	.	.	I	I	N	E	A	A	F	N	L	.	M	K	P	G	A	I	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	A	R	P	N	L	I	D	T	Q	A	M
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	S	B								.	S		T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		T	T	S	B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.										.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213										.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230																						.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions