Job Description P42912 Confidence 98.53% Date Thu Jan 5 12:02:11 GMT 2012 Rank 24 Aligned Residues 189 % Identity 11% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	A	L	S	E	R	A	S	E	Y	L	L	A	V	I	R	S	K	P	N	A	V	I	C	L	A	T	G	A	T	P	L	L	T	Y	H	Y	L	V	E	K	I	H	Q	Q	Q	V	D	V	S	Q	L	T	F	V	K	L	D	E	W	V	D	L	P	L	T	M	P	G	T	C	E	T	F	L	Q	Q	H	I
Query Conservation
Alig confidence																			.	.																					.	.	.	.	.	.																.	.
Template Conservation																			.	.																					.	.	.	.	.	.																.	.
Template Sequence		R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	.	.	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	.	.	.	.	.	.	G	I	V	T	Q	R	N	A	R	F	V	S	A	I	G	.	.	G	T	H	I	I	N	A	D	H	I	C	R	R	L	A	K	K	Y
Template Known Secondary structure																			.	.	T	T								S											.	.	.	.	.	.													S	B		.	.	B
Template Predicted Secondary structure																			.	.																					.	.	.	.	.	.																.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.										.	170	.	.	.
Predicted Secondary structure																										.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	P	L	G	L	R	E	D	Q	L	I	S	F	R	S	E	E	I	N	E	T	E	C	.	.	.	.	.	E	R	V	T	N	L	I	A	R	K	G	G	L	D	L	C	V	L	G	L	G	K	N	G	H	L	G	L	N	E	P	G	E	S	L	Q	P	.	.	.	.	.	.	.	.	.	A	C	H	I	S
Query Conservation																										.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																					.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L	G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I	V	G
Template Known Secondary structure		.	.	.	.	T								S	B	S	B		S	S									T	S												T		S													T					T	T	S	S											T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		174	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	L	D	A	.	R	T	Q	Q	H	E	M	L	K	T	A	G	R	P	V	T	R	G	I	T	L	G	L	K	D	I	L	N	A	R	E	V	L	L	L	V	T	G	E	G	K	Q	D	A	T	D	R	F	L	T	A	K	V
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		D	I	G	G	F	D	F	F	K	L	D	G	T	D	A	D	T	L	X	R	G	R	V	I	G	L	E	X	E	D	L	R	Q	I	P	N	V	V	A	X	A	S	E	S	R	K	A	L	S	I	X	G	A	L	R	T	G	V
Template Known Secondary structure				T	T	T					T	T	S		B				G	G	G	G	G	B		B								T	S	S									G	G	G										T	S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions