 |
Job Description | P42912 | Confidence | 35.94% | Date | Thu Jan 5 12:02:11 GMT 2012 |
Rank | 54 | Aligned Residues | 71 |
% Identity | 14% | Template | c3fiuD_ |
PDB info |
PDB header:ligase | Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; |
PDBTitle: structure of nmn synthetase from francisella tularensis
|
Resolution | 1.85 Å |
|
 |
  |   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | Y | T | A | L | S | E | R | A | S | E | Y | L | L | A | V | I | R | S | K | P | . |
. |
N | A | V | I | C | L | A | T | G | A | T | P | L | L | T | Y | H | Y | L | V | E | K | I | H | Q | Q | Q | V | D | V | S | Q | L | T | F | V | K | L | D | E | W | V | D | L | P | L | T | M | P | G | T | C | E | T | F | L | Q |
Query Conservation |   |
|   |
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   | . | . |   |   |   |
|   |
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
S | P | K | E | Y | S | Q | K | L | V | N | W | L | S | D | S | C | M | N | Y | P | A | E | G | F | V | I | G | L | S | G | G | I | D | S | A | V | A | A | S | L | A | V | K | T | G | L | P | . |
. |
. |
. |
. |
. |
. |
T | T | A | L | I | L | P | S | D | N | . |
N | Q | H | Q | D | M | Q | D | A | L | E | L | I | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |
| . | . | . | . | . | . | . |  |  |  |  |  |
|
|
| T | T | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|  |  |  |  |
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 60 | . | . | . | . | . | |
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
105 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
Q |
Query Conservation |   |
  |
Alig confidence |   |
|
Template Conservation |   |
  |
Template Sequence |   |
M |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
80 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|