 |
Job Description | P42912 | Confidence | 69.50% | Date | Thu Jan 5 12:02:11 GMT 2012 |
Rank | 35 | Aligned Residues | 91 |
% Identity | 14% | Template | c1gpmD_ |
PDB info |
PDB header:transferase (glutamine amidotransferase) | Chain: D: PDB Molecule:gmp synthetase; |
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
|
Resolution | 2.20 Å |
|
 |
  |   |
9 | 10 | . | . | . | . | . | . | . | |
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | S | L | L | K | E | F | H | . |
P | V | Q | T | L | Q | Q | V | E | N | Y | T | A | L | S | E | R | A | S | E | Y | L | L | A | V | I | R | S | K | P | N | A | V | I | C | L | A | T | G | A | T | P | L | L | T | Y | H | Y | L | V | E | K | I | H | Q | Q | Q | V | D | V | S | Q | L | T | F | V | K | L | D | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   | . |   |   |   |
|   |   |
|   |   |
|   |
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   | . |   |   |
|
|
|   |
|
|
|
| . | . | . | . | . |
|
|
|
|
|   |
|   |
|   |   |   |
|
|
| . |   |   |
|   |   |
|   |   |   |   |
Template Sequence |   |
G | M | R | M | L | E | R | F | V | R | D | I | C | Q | C | E | A | L | W | T | P | A | K | I | I | D | D | A | V | A | R | I | R | E | Q | V | G | D | . |
D | K | V | I | L | G | L | S | G | G | . |
. |
. |
. |
. |
V | D | S | S | V | T | A | M | L | L | H | R | A | I | G | . |
K | N | L | T | C | V | F | V | D | N |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T | S |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . |
|  |  |  |  |  |
|
| S | S | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | . | G | G |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
. | . | 230 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | |
. | . | . | . | . | . | . | 260 | . | . |
  |
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | V | D | L | P | L | T | M | P | G | T | C | E | T | F | L | Q | Q | H | I |
Query Conservation |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|
Template Sequence |   |
G | L | . |
L | R | L | N | E | A | E | Q | V | L | D | M | F | G | D | H | F |
Template Known Secondary structure |   |
S |
| . | S |
| T | T |  |  |  |  |  |  |  |  |  |  | T | T | T |
Template Predicted Secondary structure |   |
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
263 | . | |
. | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|