 |
Job Description | P0A7G6 | Confidence | 96.04% | Date | Thu Jan 5 11:05:38 GMT 2012 |
Rank | 320 | Aligned Residues | 92 |
% Identity | 16% | Template | c2p6uA_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:afuhel308 helicase; |
PDBTitle: apo structure of the hel308 superfamily 2 helicase
|
Resolution | 3.14 Å |
|
 |
  |   |
46 | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
L | S | L | D | I | A | L | G | A | G | G | L | P | M | G | R | I | V | E | I | Y | G | P | E | S | S | G | K | T | T | L | T | L | Q | V | I | A | A | A | Q | R | E | G | K | T | C | A | F | I | D | A | E | H | A | L | D | P | I | Y | A | R | K | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|
|   |   |
|
|   |
|
|
|
|   |
|   |
|
|
|
|   |
|   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |
|   |
|   |   |   |   |
|   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |   |   |   | . | . | . | . | . | . |   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |
|
|
|   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
Template Sequence |   |
E | A | V | E | K | V | F | S | . |
. |
. |
. |
. |
. |
G | K | N | L | L | L | A | M | P | T | A | A | G | K | T | L | L | A | E | M | A | M | V | R | E | A | I | K | G | G | K | S | L | Y | V | V | P | L | R | A | L | A | G | E | K | Y | E | S | F | K | K | W | E | K | I | G | L | R | I | G | I | S | T | G | D | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T | . | . | . | . | . | . |
| S |
|  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | G | G | G | G | T | T | T |
|
|  |  |  |
|
| S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
32 | . | . | . | . | . | . | . | |
|
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
G | V | D | I | D | N | L | L | C | S | Q | P | D | T | G | E | Q | A | L | E | I | C | D | A | L | A | R | S | G | A | V | D | V | I | V | V | D |
Query Conservation |   |
. | . | . | . | . |
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |
|   | . | . |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|
Template Sequence |   |
E | S | R | D | E | H | L | G | D | C | D | I | I | V | T | T | S | E | K | A | D | S | L | I | R | . |
. |
N | R | A | S | W | I | K | A | V | S | C | L | V | V | D |
Template Known Secondary structure |   |
S |
|
|
| T | T | G | G | G |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | T | T |
| S | S | G | G | G |
|
|  |  |  |  | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|  |  |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
. | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|