Job Description P0A7G6 Confidence 100.00% Date Thu Jan 5 11:05:38 GMT 2012 Rank 15 Aligned Residues 234 % Identity 29% Template c2dflA_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	A	I	D	E	N	K	.	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q
Query Conservation									.
Alig confidence									.																							.	.	.																						.
Template Conservation																																.	.	.																						.
Template Sequence		A	G	I	P	L	S	T	A	Q	K	I	I	K	E	A	R	D	A	L	D	I	R	F	K	T	A	L	E	V	K	.	.	.	K	E	R	M	N	V	K	K	I	S	T	G	S	Q	A	L	D	G	L	L	A	.	G	G	I	E	T	R	T	M	T	E	F	F	G	E	F	G	S	G	K	T	Q	L	C	H	Q
Template Known Secondary structure		T	S	S		T	T	G	G	G										T	T											.	.	.									B			S									T	.	S	S	B		T	T	S							S	T	T	S	S	T	T
Template Predicted Secondary structure																																.	.	.																						.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.
Predicted Secondary structure										.	.	.	.	.	.																		.	.	.	.								.	.	.	.																							.	.	.	.
Query SS confidence										.	.	.	.	.	.																		.	.	.	.								.	.	.	.																							.	.	.	.
Query Sequence		V	I	A	A	A	Q	R	E	.	.	.	.	.	.	G	K	T	C	A	F	I	D	A	E	H	A	L	D	P	I	Y	.	.	.	.	A	R	K	L	G	V	D	.	.	.	.	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I	C	D	A	L	.	.	.	.	A	R	S	G	A	V	D	V
Query Conservation										.	.	.	.	.	.																		.	.	.	.								.	.	.	.																							.	.	.	.
Alig confidence										.	.	.	.	.	.																		.	.	.	.								.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		L	S	V	N	V	Q	L	P	P	E	K	G	G	L	S	G	K	A	V	Y	I	D	T	E	G	T	F	R	W	E	R	I	E	N	M	A	K	A	L	G	L	D	I	D	N	V	M	N	N	I	Y	Y	I	R	A	I	N	T	D	H	Q	I	A	I	V	D	D	L	Q	E	L	V	S	K	D	P	S	I	K	L
Template Known Secondary structure						S	S	S		G	G	G	T	S		S								S	S	S															T									T								S										T									T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	E	I	G	D	S	H	M	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	I	R	M	K	I	G	V	M	F	G	N	P	E	T	T	T	G	G	N	A	L	K	F	Y	A	S
Query Conservation
Alig confidence												.													.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.													.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	V	D	S	V	T	S	H	F	.	R	A	E	Y	P	G	R	E	N	L	A	V	.	.	.	R	Q	Q	K	L	N	K	H	L	H	Q	L	T	R	L	A	E	V	Y	D	I	A	V	I	I	T	N	Q	V	M	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	H	V	P	G
Template Known Secondary structure							T	T				.				S		T	T	T	S	T	T		.	.	.																		T	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		S
Template Predicted Secondary structure												.													.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	L	D	I	R	R	I	G	A	V	K	E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	L	Y	G	E	G	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																		.							.
Template Conservation												.	.	.	.	.	.	.	.	.																		.							.
Template Sequence		I	R	I	Q	L	K	K	S	R	G	.	.	.	.	.	.	.	.	.	N	R	R	I	A	R	V	V	D	A	P	H	L	P	E	G	E	.	V	V	F	A	L	T	.	E	E	G	I
Template Known Secondary structure											T	.	.	.	.	.	.	.	.	.	T										S	S	S					.							.	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																		.							.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.		.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions