Job Description P39343 Confidence 99.90% Date Thu Jan 5 11:59:33 GMT 2012 Rank 62 Aligned Residues 266 % Identity 14% Template d2fvya1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 0.92

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																															.																																				.	.
Query SS confidence																															.																																				.	.
Query Sequence		Y	T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	.	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	.	.	K	Y	H	T	I	R	T	V	K	F	L	R	S
Query Conservation																															.																																				.	.
Alig confidence																															.																																				.	.
Template Conservation
Template Sequence		T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G
Template Known Secondary structure									S		T	T	S																T		T	T									T	T															T	T		S							S	S	G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.													.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	I	P	V	V	E	L	M	D	V	Q	G	.	.	.	.	.	.	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	R	.	.	.	.	.	.	.	.	.	.	.	.	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y
Query Conservation															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y	V
Template Known Secondary structure		T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		C	D	A	M	M	L	H	N	L	S	P	L	R	M	N	P	R	A	I	S	S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	.	.	.	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.																											.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V	D	A	L	P
Template Known Secondary structure								T	T												T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.		T	T	S					S	B
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.
		280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.									.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure							.	.	.																																		.	.	.	.	.	.	.	.
Query SS confidence							.	.	.																																		.	.	.	.	.	.	.	.
Query Sequence		I	G	R	Q	M	.	.	.	I	P	S	L	A	S	V	I	T	P	R	F	D	I	G	R	M	A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	.	.	.	.	.	.	.	.	N	T	V	D	L	G	Y	Q	I	Y	H	G	N	T	L
Query Conservation							.	.	.																																		.	.	.	.	.	.	.	.
Alig confidence							.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L
Template Known Secondary structure										T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions