Return to main results Retrieve Phyre Job Id

Job DescriptionP39343
Confidence84.06%DateThu Jan 5 11:59:33 GMT 2012
Rank470Aligned Residues32
% Identity25%Templated1d5ya1
SCOP infoDNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30....
Predicted Secondary structure 














Query SS confidence 































Query Sequence  NHRISLQDIATLAGVTKMTVSRYIRSPKKVAK
Query Conservation   
  

 


  



  






    
  
Alig confidence 































Template Conservation     
 
  

     
   
 
 

   
 

Template Sequence  DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI
Template Known Secondary structure  SSS


TTTSS
SS
Template Predicted Secondary structure 










Template SS confidence 































   1920.........30.........40.........50
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions