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Job DescriptionP39343
Confidence100.00%DateThu Jan 5 11:59:33 GMT 2012
Rank4Aligned Residues318
% Identity20%Templatec3h5tA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
Resolution2.53 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  NHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADIL
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Template Sequence  QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYAGA. . . . . IGVLLTEDLTYAFE. . . DMASVDFL
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TTTS

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   7..10.........20.........30.........40.........50...... ...60.........70 ........
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  AGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGF
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Template Sequence  AGVAQAAGDTQLTLI. PASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAP
Template Known Secondary structure  SSS
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TT

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   93......100....... ..110.........120.........130.........140.........150.........160.........170.
 
   163......170.........180....... ..190.........200.........210... ......220...
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Query Sequence  DNRQAAFDMVCTMLEKRVRHKILYL. . . . . . . . . . . . . . . . . GSKDDTRDEQRYQGYCDAMMLHNLSP. . LRMNPRAISS
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Template Sequence  NNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINN
Template Known Secondary structure 
TTT

S

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T


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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  IHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAA
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Template Sequence  RQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALA. . RDLTTVIQPNKLKGFKAG
Template Known Secondary structure 
TT

SSTT

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   252.......260.........270.........280.........290.........300.........310. ........320.........
 
   304.....310.........320.........330..
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Query Sequence  QMLLSKIKNNDHNHNTVDLGYQIYHGNTL
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Template Sequence  ETLLKMIDKEYVEP. EVELETSFHPGSTV
Template Known Secondary structure  TT



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   330.........340... ......350.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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