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Job DescriptionP39343
Confidence100.00%DateThu Jan 5 11:59:33 GMT 2012
Rank9Aligned Residues266
% Identity32%Templatec3h5oB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120.........130.........140...
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Query Sequence  YTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATI
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Template Sequence  RTVLVLIPSLANTVFLETLTGIETVLDAAGYQXLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQHAL
Template Known Secondary structure 
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STT
TTTT

TT
TT

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TTTT
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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   144.....150.........160.........170.........180.........190.........200......... 210.........220.
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Query Sequence  PVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLH. . NLSPLRMNPRAI
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Template Sequence  PVVYXXDL. ADDGRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLD. ERVXKRLDGYRAALDAADCRDAGLEWLDPQP
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SSS



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.T


GGG
S
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   151....... .160.........170.........180.........190....... ..200.........210.........220........
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  SSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRM
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Template Sequence  SSXQXGADXLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLTTVATPRRDIGVH
Template Known Secondary structure 


TT

SSTT

TTTT

SB

TSSS

B

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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   302.......310.........320.........330.
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Query Sequence  AAQMLLSKIKNNDHNHNTVDLGYQIYHGNT
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Template Sequence  AAKALLQLIDGEEPASRRADLGFRLXLRRS
Template Known Secondary structure  TT


S
S




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   309310.........320.........330........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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