Job Description P39343 Confidence 100.00% Date Thu Jan 5 11:59:33 GMT 2012 Rank 32 Aligned Residues 264 % Identity 16% Template c3g85A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum Resolution 1.84 Å

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		65	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		T	L	G	I	L	I	P	.	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	I	R	T	V	K	F	L	R	S	A	T	I
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		T	I	A	L	Y	W	S	S	D	I	S	V	N	I	I	S	R	F	L	R	G	L	Q	S	K	L	A	K	Q	N	Y	N	Y	N	V	V	I	C	P	Y	K	T	D	C	L	H	L	E	K	G	I	S	K	E	N	S	F	D	A	A	I	I	A	N	I	S	N	Y	D	L	E	Y	L	N	K	A	S	L	T	L
Template Known Secondary structure									T	T	S		G	G	G															T	T	T		S									T	T		G	G	G		G	G	G	S	T	T	T			S					S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		P	V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	R	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	R	.	M	N	P	R	A	I	S
Query Conservation																																																																										.
Alig confidence									.	.																																																																.
Template Conservation									.	.
Template Sequence		P	I	I	L	F	N	R	.	.	L	S	N	K	Y	S	S	V	N	V	D	N	Y	K	X	G	E	K	A	S	L	L	F	A	K	K	R	Y	K	S	A	A	A	I	L	T	E	S	L	N	D	A	X	D	N	R	N	K	G	F	I	E	T	C	H	K	N	G	I	K	I	S	E	N	H	I	I	A	A	E	N
Template Known Secondary structure							S		.	.			S	S	S																					T	T			B									S	S																	T	T		B			G	G	G						S
Template Predicted Secondary structure									.	.
Template SS confidence
		147	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	.	.	H	G	L	E	I	G	R	Q	M	I	P	S	L	A	S	V	I	T	P	R	F	D	I	G	R
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		S	I	H	G	G	V	D	A	A	K	K	L	X	K	L	K	N	T	P	K	A	L	F	C	N	S	D	S	I	A	L	G	V	I	S	V	L	N	K	R	Q	I	S	I	P	D	D	I	E	I	V	A	I	G	X	N	D	R	E	Y	T	E	F	S	T	P	P	V	T	I	V	D	I	P	I	E	E	X	A	G
Template Known Secondary structure		S												T	T	S	S	S			S					S	S														T	T			T	T	T	T									S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	N	T	V	D	L	G	Y	Q	I	Y	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	C	I	S	L	V	E	K	L	I	N	R	D	I	E	N	P	T	S	I	L	F	D	G	P	L	I	L	R	N
Template Known Secondary structure												T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions