Return to main results Retrieve Phyre Job Id

Job DescriptionP39343
Confidence94.11%DateThu Jan 5 11:59:33 GMT 2012
Rank149Aligned Residues205
% Identity11%Templatec3eafA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70...... ...80.........90... ......100.........110........ .120......
Predicted Secondary structure 






..

.............






.







Query SS confidence 













. .
















. . . . . . . . . . . . .
























.







Query Sequence  SYTLGILIPSFQNQ. . LFADILAGIESVTSEHN. . . . . . . . . . . . . YQTLIANYNYDRDSEEESVINLLSY. NIDGIILS
Query Conservation     
          ..                 .............                         .        
Alig confidence 













..
















.............
























.







Template Conservation 




    


  
  
     
  

   

  


 
 
    



  
    
  
   
  

    
  
 
 
Template Sequence  TINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGW
Template Known Secondary structure 
SSSTT

TT


TT
TT

S
Template Predicted Secondary structure 

























Template SS confidence 















































































   45....50.........60.........70.........80.........90.........100.........110.........120....
 
   127..130.........140......... 150.........160.........170.........180.........190.........200...
Predicted Secondary structure 








...




















Query SS confidence 






















. . .





















































Query Sequence  EKYHTIRTVKFLRSATIPVVELM. . . DVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYC
Query Conservation                         ...          
                                     
  
  
Alig confidence 






















...





















































Template Conservation   
    
            
              
                     
      
       
        
Template Sequence  GTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIK
Template Known Secondary structure 
T
S


GGGTTSTT
SS


S
TT
TT
Template Predicted Secondary structure 



























Template SS confidence 















































































   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   204.....210.........220.........230.........240.........250.........260.......
Predicted Secondary structure 




















Query SS confidence 































































Query Sequence  DAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVP
Query Conservation                                 
       

    
  
      
   
  

Alig confidence 































































Template Conservation        
  

            
      
      
 
                   
    
Template Sequence  KAAPSLGLQVVGDYDLPLRATEADAERIAREXLAADPDYVWCGNTISSCSLLGRAXAKVGLDAF
Template Known Secondary structure  TGGGT

TT

TT

S
S
T


Template Predicted Secondary structure 
























Template SS confidence 































































   205....210.........220.........230.........240.........250.........260........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions