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Job DescriptionP39343
Confidence99.87%DateThu Jan 5 11:59:33 GMT 2012
Rank64Aligned Residues252
% Identity13%Templatec3d02A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90......... 100.........110.........120.........130 .........
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Query Sequence  YTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIA. NYNYDRDSEEESVINLLSYNIDGIILSEKYH. . . TIRTVKFLR
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Template Sequence  KTVVNISKVDGXPWFNRXGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD
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   2930.........40.........50.........60.........70.........80.........90.........100........
 
   140.........150.........160.........170....... ..180.........190.........200.........210.......
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Query Sequence  SATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLE. . KRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMN
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Template Sequence  AGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHXAKRXGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDXHEVT
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   109110.........120.........130.........140.........150.........160.........170.........180........
 
   218 .220.........230.........240.........250.........260.........270.........280....... ..290..
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Query Sequence  P. . RAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPS. . . LASVI
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Template Sequence  RRXPVAESVDDSRRTTLDLXKTYPDLKAVVSFGSNGPIGAGRAVKEKRAK. . NKVAVYGXXIPSQAASLIKSGDITEGIT
Template Known Secondary structure  S
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   189190.........200.........210.........220.........230........ .240.........250.........260......
 
   293......300.........310.......
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Query Sequence  TPRFDIGRMAAQMLLSKIKNNDHNH
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Template Sequence  YDPATAGYALAAVASTLLNGKTIEP
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   267..270.........280.........290.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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