Job Description P39343 Confidence 100.00% Date Thu Jan 5 11:59:33 GMT 2012 Rank 23 Aligned Residues 267 % Identity 21% Template c3brqA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg Resolution 2.00 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		S	Y	T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	I	R	T	V	K	F	L	R	.	S	A
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	Y	F	S	E	L	L	F	H	A	A	R	X	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	X	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D	A	H
Template Known Secondary structure											G	G	G																		T	T									T	T	S														T	T		S							S	S	S											T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		T	I	P	V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	R	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	R	.	M	N	P	R	A
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		S	Q	P	I	X	V	L	N	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	X	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G
Template Known Secondary structure		S	S						S				S	S	S	G	G	G																				T	T			S								T	T																	T	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E	I	G	R	Q	M	I	P	S	L	A	S	V	I	T	P	R	F	D	I	G	R
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		K	W	T	P	A	S	G	A	E	G	V	E	X	L	L	.	.	E	R	K	F	S	A	L	V	A	S	N	D	D	X	A	I	G	A	X	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	Y	T	V	P	A	L	S	S	V	K	I	P	V	T	E	X	I	Q
Template Known Secondary structure			S	S													.	.	T				S					S	S															T			T	T	T	T							S			T	T	G	G	G	S	S	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	N	T	V	D	L	G	Y	Q	I	Y	H	G	N	T	L
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		E	I	I	G	R	L	I	F	X	L	D	G	G	D	F	S	P	P	K	T	.	F	S	G	K	L	I	R	R	D	S	L
Template Known Secondary structure												T	T									.									T	T
Template Predicted Secondary structure																						.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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