Job Description P39343 Confidence 99.92% Date Thu Jan 5 11:59:33 GMT 2012 Rank 59 Aligned Residues 266 % Identity 15% Template c2x7xA_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 Resolution 2.64 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																																								.	.
Query SS confidence																																.																																								.	.
Query Sequence		S	Y	T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	.	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	.	.	I	R	T	V	K	F	L	R
Query Conservation																																.																																								.	.
Alig confidence												.																				.																																								.	.
Template Conservation												.
Template Sequence		H	F	R	I	G	V	A	Q	C	S	.	D	D	S	W	R	H	K	M	N	D	E	I	L	R	E	A	M	F	Y	N	G	V	S	V	E	I	R	S	A	G	D	D	N	S	K	Q	A	E	D	V	H	Y	F	M	D	E	G	V	D	L	L	I	I	S	A	N	E	A	A	P	M	T	P	I	V	E	E	A	Y
Template Known Secondary structure										S		.		S															T	T	S	S	S									T	T															T	T		S							S	S
Template Predicted Secondary structure												.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		S	A	T	I	P	V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	.	.	.	R	V	R	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	R	M
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		Q	K	G	I	P	V	I	L	V	D	R	K	I	L	S	D	K	Y	T	A	Y	I	G	A	D	N	Y	E	I	G	R	S	V	G	N	Y	I	A	S	S	L	K	G	K	G	N	I	V	E	L	T	G	L	S	G	S	T	P	A	M	E	R	H	Q	G	F	M	A	A	I	S	K	F	P	D	I	K	L	I	D
Template Known Secondary structure			T	T							S	S			S	S	S		S	S																						T	T	T									S		T	T	S																T		T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		N	P	R	A	I	S	S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E	I	.	.	.	.	G	R	Q	M	I	P	S	L	A	S	V	I
Query Conservation																																																																		.	.	.	.
Alig confidence																																																	.	.																.	.	.	.
Template Conservation																																																	.	.
Template Sequence		K	A	D	A	A	W	E	R	G	P	A	E	I	E	M	D	S	M	L	R	R	H	P	K	I	D	A	V	Y	A	H	N	D	R	I	A	P	G	A	Y	Q	A	A	K	M	A	G	.	.	R	E	K	E	M	I	F	V	G	I	D	A	L	P	G	K	G	N	G	L	E	L	V	L	D	S	V	L	D	A	T
Template Known Secondary structure						T	T	S																S								S	S	T	T												T	T	.	.		T	T	S	S										S	T	T	S							T	T	S		S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	R	F	D	I	G	R	M	A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	N	T	V	D	L	G	Y	Q	I	Y	H	G	N	T	L
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		F	I	Y	P	T	N	G	D	K	V	L	Q	L	A	M	D	I	L	E	K	K	.	P	Y	P	K	E	T	V	M	N	T	A	V	V	D	R	T	N	A
Template Known Secondary structure																				T	T		.				S											T	T	T
Template Predicted Secondary structure																							.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions